Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28145 | 3' | -50.5 | NC_005887.1 | + | 15979 | 0.66 | 0.888221 |
Target: 5'- aGUUCGuCGAggaugucgugcgcGCGCAGacCCGCcGCGAg -3' miRNA: 3'- gCAAGC-GCU-------------UGCGUCauGGUGuUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 19357 | 0.69 | 0.779356 |
Target: 5'- --cUCGCGcagcaGACGC-GUGCgGCGACGAu -3' miRNA: 3'- gcaAGCGC-----UUGCGuCAUGgUGUUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 7472 | 0.68 | 0.809785 |
Target: 5'- cCGUUCGCGAACG-AGcGCUACcuGCGc -3' miRNA: 3'- -GCAAGCGCUUGCgUCaUGGUGu-UGCu -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 38118 | 0.68 | 0.829077 |
Target: 5'- --aUCGCGA--GCAGgaaaacaACCGCGGCGAu -3' miRNA: 3'- gcaAGCGCUugCGUCa------UGGUGUUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 17864 | 0.68 | 0.830018 |
Target: 5'- --cUCGCGAcgACGUGGgcccggaaccuguccGCCGCGACGAu -3' miRNA: 3'- gcaAGCGCU--UGCGUCa--------------UGGUGUUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 26601 | 0.67 | 0.844769 |
Target: 5'- cCGUUCGCGAGCuGCAGgcauuucaucgucuUGCuCGCcGCGu -3' miRNA: 3'- -GCAAGCGCUUG-CGUC--------------AUG-GUGuUGCu -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 28248 | 0.67 | 0.856297 |
Target: 5'- -cUUCGCGAgcgGCGCuucACCACuGACGAg -3' miRNA: 3'- gcAAGCGCU---UGCGucaUGGUG-UUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 23578 | 0.67 | 0.864872 |
Target: 5'- cCGgcagUGCGAACGCG--ACUACGACGc -3' miRNA: 3'- -GCaa--GCGCUUGCGUcaUGGUGUUGCu -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 5397 | 0.66 | 0.888221 |
Target: 5'- ---gCGCGAccggugaaccggcGgGCGGcGCCGCAGCGAc -3' miRNA: 3'- gcaaGCGCU-------------UgCGUCaUGGUGUUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 4741 | 0.69 | 0.767807 |
Target: 5'- ---cCGCGAGCaauaccgGCGGUGCUuuuGCGACGAg -3' miRNA: 3'- gcaaGCGCUUG-------CGUCAUGG---UGUUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 11317 | 0.69 | 0.73652 |
Target: 5'- uCGgcaGCGAGCGCcgcaACCGCGACGGc -3' miRNA: 3'- -GCaagCGCUUGCGuca-UGGUGUUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 34708 | 0.7 | 0.714364 |
Target: 5'- cCGUcgUCGCGcuUGCGGUG-CGCGGCGAu -3' miRNA: 3'- -GCA--AGCGCuuGCGUCAUgGUGUUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 14846 | 0.76 | 0.360573 |
Target: 5'- aCGUUCGCGGGCGUGcacACCGCAGCa- -3' miRNA: 3'- -GCAAGCGCUUGCGUca-UGGUGUUGcu -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 12928 | 0.76 | 0.369578 |
Target: 5'- -uUUCGCGAGCGCGucccUGCCGCAGCa- -3' miRNA: 3'- gcAAGCGCUUGCGUc---AUGGUGUUGcu -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 37569 | 0.74 | 0.457226 |
Target: 5'- aGUUgGCGGcuCGCGGaGCCGCGGCGGa -3' miRNA: 3'- gCAAgCGCUu-GCGUCaUGGUGUUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 10706 | 0.73 | 0.53249 |
Target: 5'- uCGaaCGCGAuggaccGCGCGGUGCCGCuguuCGAu -3' miRNA: 3'- -GCaaGCGCU------UGCGUCAUGGUGuu--GCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 8926 | 0.71 | 0.623214 |
Target: 5'- aCGUUCGCGAuccgcgcgACGCAGagcGCCGacACGAu -3' miRNA: 3'- -GCAAGCGCU--------UGCGUCa--UGGUguUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 17181 | 0.71 | 0.6347 |
Target: 5'- aGcgCGCGAACGCG--GCCGCAcGCGGc -3' miRNA: 3'- gCaaGCGCUUGCGUcaUGGUGU-UGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 33408 | 0.71 | 0.6347 |
Target: 5'- --aUCGCGGuGCGUAGaUACCGCGAcCGAg -3' miRNA: 3'- gcaAGCGCU-UGCGUC-AUGGUGUU-GCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 36490 | 0.7 | 0.6805 |
Target: 5'- gGUUCGCGAucaccggaaccGUGCGGUcgACCGCAGCa- -3' miRNA: 3'- gCAAGCGCU-----------UGCGUCA--UGGUGUUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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