miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28145 3' -50.5 NC_005887.1 + 1896 0.66 0.910536
Target:  5'- gCGUUCGUGucgccgaaGAUGCcGUACCAgguCGGCGGc -3'
miRNA:   3'- -GCAAGCGC--------UUGCGuCAUGGU---GUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 15532 0.68 0.789682
Target:  5'- uCGaaCGCGucuugguGCGCGGUcAUCGCGGCGAc -3'
miRNA:   3'- -GCaaGCGCu------UGCGUCA-UGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 23246 0.69 0.73652
Target:  5'- cCGUgaUCGCGAGCGCgacgagaaAGgcaaGCCACAcACGGg -3'
miRNA:   3'- -GCA--AGCGCUUGCG--------UCa---UGGUGU-UGCU- -5'
28145 3' -50.5 NC_005887.1 + 21431 0.81 0.190527
Target:  5'- gCGUUCGUGAACGCAGUAgUCGCAAguUGAg -3'
miRNA:   3'- -GCAAGCGCUUGCGUCAU-GGUGUU--GCU- -5'
28145 3' -50.5 NC_005887.1 + 32108 0.66 0.89646
Target:  5'- cCGUcUGCGGGCGuCGGUGCCccgcACAucCGAg -3'
miRNA:   3'- -GCAaGCGCUUGC-GUCAUGG----UGUu-GCU- -5'
28145 3' -50.5 NC_005887.1 + 36717 0.66 0.89646
Target:  5'- --aUCGaaaagauGGGCGCAG-ACCACGACGc -3'
miRNA:   3'- gcaAGCg------CUUGCGUCaUGGUGUUGCu -5'
28145 3' -50.5 NC_005887.1 + 18733 0.66 0.881223
Target:  5'- aCGUUCGaCGAgacugcGCGCAGcgGCUggaACAGCGu -3'
miRNA:   3'- -GCAAGC-GCU------UGCGUCa-UGG---UGUUGCu -5'
28145 3' -50.5 NC_005887.1 + 33707 0.66 0.881223
Target:  5'- --cUCGcCGAGCGCAGcGCgCGCuACGGg -3'
miRNA:   3'- gcaAGC-GCUUGCGUCaUG-GUGuUGCU- -5'
28145 3' -50.5 NC_005887.1 + 8784 0.67 0.864872
Target:  5'- uCGUggcCGCGAcgaaGCGCuuaccGCCGCGGCGGa -3'
miRNA:   3'- -GCAa--GCGCU----UGCGuca--UGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 18442 0.68 0.799829
Target:  5'- gGUUCGCGAGCGCcGgcgcGCCGuCuacGCGGa -3'
miRNA:   3'- gCAAGCGCUUGCGuCa---UGGU-Gu--UGCU- -5'
28145 3' -50.5 NC_005887.1 + 36328 0.67 0.83839
Target:  5'- aGUaCGCGGACGaAGgcacgGCCGCGcACGAg -3'
miRNA:   3'- gCAaGCGCUUGCgUCa----UGGUGU-UGCU- -5'
28145 3' -50.5 NC_005887.1 + 21182 0.66 0.881223
Target:  5'- gCGUUgGCGAGCaccguguuuGCGGcgACCGCGcCGAu -3'
miRNA:   3'- -GCAAgCGCUUG---------CGUCa-UGGUGUuGCU- -5'
28145 3' -50.5 NC_005887.1 + 26407 0.66 0.910536
Target:  5'- aUGUUCGCGcacccggccAGCGCcg-GCCACGGCc- -3'
miRNA:   3'- -GCAAGCGC---------UUGCGucaUGGUGUUGcu -5'
28145 3' -50.5 NC_005887.1 + 22506 0.68 0.829077
Target:  5'- aCGUUCGUGAcggcaauccacAUGCAGaACagcagCACGACGAg -3'
miRNA:   3'- -GCAAGCGCU-----------UGCGUCaUG-----GUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 39479 0.66 0.903645
Target:  5'- -aUUCGCGAgaugccgaACGCGGUcgcgACCACGguuGCGc -3'
miRNA:   3'- gcAAGCGCU--------UGCGUCA----UGGUGU---UGCu -5'
28145 3' -50.5 NC_005887.1 + 37070 0.66 0.881223
Target:  5'- uGUUCGCGuacggccuGCGC-GUGCuCGcCGGCGAg -3'
miRNA:   3'- gCAAGCGCu-------UGCGuCAUG-GU-GUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 42164 0.68 0.819538
Target:  5'- uCGUUCGUcGACGCGGcAUCGCGccccacGCGAc -3'
miRNA:   3'- -GCAAGCGcUUGCGUCaUGGUGU------UGCU- -5'
28145 3' -50.5 NC_005887.1 + 23498 0.69 0.758219
Target:  5'- ---gCGgGAugGCGGgcgGCUGCGACGAg -3'
miRNA:   3'- gcaaGCgCUugCGUCa--UGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 16184 0.66 0.903645
Target:  5'- gGUUgCGCGcGGCGCAGcGCCACcggaaAGCGu -3'
miRNA:   3'- gCAA-GCGC-UUGCGUCaUGGUG-----UUGCu -5'
28145 3' -50.5 NC_005887.1 + 3326 0.66 0.888984
Target:  5'- --aUCGCGGcgACGaAGUugCGCAGCGc -3'
miRNA:   3'- gcaAGCGCU--UGCgUCAugGUGUUGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.