Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28145 | 3' | -50.5 | NC_005887.1 | + | 8926 | 0.71 | 0.623214 |
Target: 5'- aCGUUCGCGAuccgcgcgACGCAGagcGCCGacACGAu -3' miRNA: 3'- -GCAAGCGCU--------UGCGUCa--UGGUguUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 17181 | 0.71 | 0.6347 |
Target: 5'- aGcgCGCGAACGCG--GCCGCAcGCGGc -3' miRNA: 3'- gCaaGCGCUUGCGUcaUGGUGU-UGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 33408 | 0.71 | 0.6347 |
Target: 5'- --aUCGCGGuGCGUAGaUACCGCGAcCGAg -3' miRNA: 3'- gcaAGCGCU-UGCGUC-AUGGUGUU-GCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 36490 | 0.7 | 0.6805 |
Target: 5'- gGUUCGCGAucaccggaaccGUGCGGUcgACCGCAGCa- -3' miRNA: 3'- gCAAGCGCU-----------UGCGUCA--UGGUGUUGcu -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 34708 | 0.7 | 0.714364 |
Target: 5'- cCGUcgUCGCGcuUGCGGUG-CGCGGCGAu -3' miRNA: 3'- -GCA--AGCGCuuGCGUCAUgGUGUUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 11317 | 0.69 | 0.73652 |
Target: 5'- uCGgcaGCGAGCGCcgcaACCGCGACGGc -3' miRNA: 3'- -GCaagCGCUUGCGuca-UGGUGUUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 4741 | 0.69 | 0.767807 |
Target: 5'- ---cCGCGAGCaauaccgGCGGUGCUuuuGCGACGAg -3' miRNA: 3'- gcaaGCGCUUG-------CGUCAUGG---UGUUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 19357 | 0.69 | 0.779356 |
Target: 5'- --cUCGCGcagcaGACGC-GUGCgGCGACGAu -3' miRNA: 3'- gcaAGCGC-----UUGCGuCAUGgUGUUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 18733 | 0.66 | 0.881223 |
Target: 5'- aCGUUCGaCGAgacugcGCGCAGcgGCUggaACAGCGu -3' miRNA: 3'- -GCAAGC-GCU------UGCGUCa-UGG---UGUUGCu -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 33707 | 0.66 | 0.881223 |
Target: 5'- --cUCGcCGAGCGCAGcGCgCGCuACGGg -3' miRNA: 3'- gcaAGC-GCUUGCGUCaUG-GUGuUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 37070 | 0.66 | 0.881223 |
Target: 5'- uGUUCGCGuacggccuGCGC-GUGCuCGcCGGCGAg -3' miRNA: 3'- gCAAGCGCu-------UGCGuCAUG-GU-GUUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 21182 | 0.66 | 0.881223 |
Target: 5'- gCGUUgGCGAGCaccguguuuGCGGcgACCGCGcCGAu -3' miRNA: 3'- -GCAAgCGCUUG---------CGUCa-UGGUGUuGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 8784 | 0.67 | 0.864872 |
Target: 5'- uCGUggcCGCGAcgaaGCGCuuaccGCCGCGGCGGa -3' miRNA: 3'- -GCAa--GCGCU----UGCGuca--UGGUGUUGCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 3326 | 0.66 | 0.888984 |
Target: 5'- --aUCGCGGcgACGaAGUugCGCAGCGc -3' miRNA: 3'- gcaAGCGCU--UGCgUCAugGUGUUGCu -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 36717 | 0.66 | 0.89646 |
Target: 5'- --aUCGaaaagauGGGCGCAG-ACCACGACGc -3' miRNA: 3'- gcaAGCg------CUUGCGUCaUGGUGUUGCu -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 32108 | 0.66 | 0.89646 |
Target: 5'- cCGUcUGCGGGCGuCGGUGCCccgcACAucCGAg -3' miRNA: 3'- -GCAaGCGCUUGC-GUCAUGG----UGUu-GCU- -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 16184 | 0.66 | 0.903645 |
Target: 5'- gGUUgCGCGcGGCGCAGcGCCACcggaaAGCGu -3' miRNA: 3'- gCAA-GCGC-UUGCGUCaUGGUG-----UUGCu -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 39479 | 0.66 | 0.903645 |
Target: 5'- -aUUCGCGAgaugccgaACGCGGUcgcgACCACGguuGCGc -3' miRNA: 3'- gcAAGCGCU--------UGCGUCA----UGGUGU---UGCu -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 26407 | 0.66 | 0.910536 |
Target: 5'- aUGUUCGCGcacccggccAGCGCcg-GCCACGGCc- -3' miRNA: 3'- -GCAAGCGC---------UUGCGucaUGGUGUUGcu -5' |
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28145 | 3' | -50.5 | NC_005887.1 | + | 21431 | 0.81 | 0.190527 |
Target: 5'- gCGUUCGUGAACGCAGUAgUCGCAAguUGAg -3' miRNA: 3'- -GCAAGCGCUUGCGUCAU-GGUGUU--GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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