miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28145 3' -50.5 NC_005887.1 + 14846 0.76 0.360573
Target:  5'- aCGUUCGCGGGCGUGcacACCGCAGCa- -3'
miRNA:   3'- -GCAAGCGCUUGCGUca-UGGUGUUGcu -5'
28145 3' -50.5 NC_005887.1 + 15532 0.68 0.789682
Target:  5'- uCGaaCGCGucuugguGCGCGGUcAUCGCGGCGAc -3'
miRNA:   3'- -GCaaGCGCu------UGCGUCA-UGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 15979 0.66 0.888221
Target:  5'- aGUUCGuCGAggaugucgugcgcGCGCAGacCCGCcGCGAg -3'
miRNA:   3'- gCAAGC-GCU-------------UGCGUCauGGUGuUGCU- -5'
28145 3' -50.5 NC_005887.1 + 16184 0.66 0.903645
Target:  5'- gGUUgCGCGcGGCGCAGcGCCACcggaaAGCGu -3'
miRNA:   3'- gCAA-GCGC-UUGCGUCaUGGUG-----UUGCu -5'
28145 3' -50.5 NC_005887.1 + 16856 0.66 0.903645
Target:  5'- ---cCGCGA--GguGUACCGCGGCGc -3'
miRNA:   3'- gcaaGCGCUugCguCAUGGUGUUGCu -5'
28145 3' -50.5 NC_005887.1 + 17181 0.71 0.6347
Target:  5'- aGcgCGCGAACGCG--GCCGCAcGCGGc -3'
miRNA:   3'- gCaaGCGCUUGCGUcaUGGUGU-UGCU- -5'
28145 3' -50.5 NC_005887.1 + 17352 0.73 0.510469
Target:  5'- gCGUUUGCGcGCGCGGcGCCGCccGACGu -3'
miRNA:   3'- -GCAAGCGCuUGCGUCaUGGUG--UUGCu -5'
28145 3' -50.5 NC_005887.1 + 17864 0.68 0.830018
Target:  5'- --cUCGCGAcgACGUGGgcccggaaccuguccGCCGCGACGAu -3'
miRNA:   3'- gcaAGCGCU--UGCGUCa--------------UGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 18442 0.68 0.799829
Target:  5'- gGUUCGCGAGCGCcGgcgcGCCGuCuacGCGGa -3'
miRNA:   3'- gCAAGCGCUUGCGuCa---UGGU-Gu--UGCU- -5'
28145 3' -50.5 NC_005887.1 + 18733 0.66 0.881223
Target:  5'- aCGUUCGaCGAgacugcGCGCAGcgGCUggaACAGCGu -3'
miRNA:   3'- -GCAAGC-GCU------UGCGUCa-UGG---UGUUGCu -5'
28145 3' -50.5 NC_005887.1 + 18864 1.1 0.002355
Target:  5'- uCGUUCGCGAACGCAGUACCACAACGAu -3'
miRNA:   3'- -GCAAGCGCUUGCGUCAUGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 19357 0.69 0.779356
Target:  5'- --cUCGCGcagcaGACGC-GUGCgGCGACGAu -3'
miRNA:   3'- gcaAGCGC-----UUGCGuCAUGgUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 21182 0.66 0.881223
Target:  5'- gCGUUgGCGAGCaccguguuuGCGGcgACCGCGcCGAu -3'
miRNA:   3'- -GCAAgCGCUUG---------CGUCa-UGGUGUuGCU- -5'
28145 3' -50.5 NC_005887.1 + 21431 0.81 0.190527
Target:  5'- gCGUUCGUGAACGCAGUAgUCGCAAguUGAg -3'
miRNA:   3'- -GCAAGCGCUUGCGUCAU-GGUGUU--GCU- -5'
28145 3' -50.5 NC_005887.1 + 22506 0.68 0.829077
Target:  5'- aCGUUCGUGAcggcaauccacAUGCAGaACagcagCACGACGAg -3'
miRNA:   3'- -GCAAGCGCU-----------UGCGUCaUG-----GUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 23246 0.69 0.73652
Target:  5'- cCGUgaUCGCGAGCGCgacgagaaAGgcaaGCCACAcACGGg -3'
miRNA:   3'- -GCA--AGCGCUUGCG--------UCa---UGGUGU-UGCU- -5'
28145 3' -50.5 NC_005887.1 + 23498 0.69 0.758219
Target:  5'- ---gCGgGAugGCGGgcgGCUGCGACGAg -3'
miRNA:   3'- gcaaGCgCUugCGUCa--UGGUGUUGCU- -5'
28145 3' -50.5 NC_005887.1 + 23578 0.67 0.864872
Target:  5'- cCGgcagUGCGAACGCG--ACUACGACGc -3'
miRNA:   3'- -GCaa--GCGCUUGCGUcaUGGUGUUGCu -5'
28145 3' -50.5 NC_005887.1 + 26407 0.66 0.910536
Target:  5'- aUGUUCGCGcacccggccAGCGCcg-GCCACGGCc- -3'
miRNA:   3'- -GCAAGCGC---------UUGCGucaUGGUGUUGcu -5'
28145 3' -50.5 NC_005887.1 + 26601 0.67 0.844769
Target:  5'- cCGUUCGCGAGCuGCAGgcauuucaucgucuUGCuCGCcGCGu -3'
miRNA:   3'- -GCAAGCGCUUG-CGUC--------------AUG-GUGuUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.