miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28147 5' -55.4 NC_005887.1 + 17184 0.68 0.522485
Target:  5'- gCGCGAACGCGGccGCaCGCgGcaauguuGCGCCGc -3'
miRNA:   3'- -GCGUUUGUGCCa-CGaGCGgU-------UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 17347 0.67 0.578484
Target:  5'- uGCGcGCGCGGcGC-CGCCcGACGUCu -3'
miRNA:   3'- gCGUuUGUGCCaCGaGCGG-UUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 17656 0.75 0.196052
Target:  5'- gCGCGAGCGCGGgauugacgggcgUGUUCGUC-GCGCCGg -3'
miRNA:   3'- -GCGUUUGUGCC------------ACGAGCGGuUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 17957 0.75 0.175599
Target:  5'- uCGCAcauauGCGCGG-GCUCGCCGGCaucgGCCGc -3'
miRNA:   3'- -GCGUu----UGUGCCaCGAGCGGUUG----CGGU- -5'
28147 5' -55.4 NC_005887.1 + 18054 0.67 0.578484
Target:  5'- gGuCAGGCuguuccaguCGGUGCg-GCCGAUGCCGg -3'
miRNA:   3'- gC-GUUUGu--------GCCACGagCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 18139 0.75 0.190752
Target:  5'- gGCgAAGCGCGG-GC-CGCCGACGUCGu -3'
miRNA:   3'- gCG-UUUGUGCCaCGaGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 18314 0.68 0.481113
Target:  5'- uCGCccGugACGGUGCcCGgCGugGCCGa -3'
miRNA:   3'- -GCGu-UugUGCCACGaGCgGUugCGGU- -5'
28147 5' -55.4 NC_005887.1 + 18455 0.72 0.307177
Target:  5'- gCGUAGGCcauCGG-GUUCGCgAGCGCCGg -3'
miRNA:   3'- -GCGUUUGu--GCCaCGAGCGgUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 18540 0.66 0.634542
Target:  5'- gGCGuuCuCGGUGggCGgCGGCGCCGg -3'
miRNA:   3'- gCGUuuGuGCCACgaGCgGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 19259 0.66 0.600834
Target:  5'- uGUAccGCuuGGUGC-CGCCGACGCa- -3'
miRNA:   3'- gCGUu-UGugCCACGaGCGGUUGCGgu -5'
28147 5' -55.4 NC_005887.1 + 19281 0.69 0.460521
Target:  5'- uGCAuACACGacGCUCGUCGuaaccGCGCCGc -3'
miRNA:   3'- gCGUuUGUGCcaCGAGCGGU-----UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 19405 0.68 0.523565
Target:  5'- gCGCGAGCAUGGUcaGCUUaUCgAGCGCCu -3'
miRNA:   3'- -GCGUUUGUGCCA--CGAGcGG-UUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 21042 0.7 0.392399
Target:  5'- uGCGAGCGUGGcGCcaagCGCCAGCGCgGg -3'
miRNA:   3'- gCGUUUGUGCCaCGa---GCGGUUGCGgU- -5'
28147 5' -55.4 NC_005887.1 + 21116 1.09 0.000717
Target:  5'- cCGCAAACACGGUGCUCGCCAACGCCAc -3'
miRNA:   3'- -GCGUUUGUGCCACGAGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 21177 0.7 0.392399
Target:  5'- gGCGAGCACcGUGUUUGCgGcgaccGCGCCGa -3'
miRNA:   3'- gCGUUUGUGcCACGAGCGgU-----UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 21381 0.67 0.538767
Target:  5'- uGCGgucGGCGCGGUGggCGUgcccgugaaugugggCGACGCCAg -3'
miRNA:   3'- gCGU---UUGUGCCACgaGCG---------------GUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 22748 0.67 0.538767
Target:  5'- uCGCGAAguCGGacgacggcuacaacgUGCUCGUuggcuCGACGCCGg -3'
miRNA:   3'- -GCGUUUguGCC---------------ACGAGCG-----GUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 22979 0.74 0.236222
Target:  5'- gCGCGAGCAUGGcGCgUUGCCGcugaucgACGCCGg -3'
miRNA:   3'- -GCGUUUGUGCCaCG-AGCGGU-------UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 23044 0.68 0.491576
Target:  5'- aGCGgcAACGCGccaUGCUCGCgCAGCuGCCGc -3'
miRNA:   3'- gCGU--UUGUGCc--ACGAGCG-GUUG-CGGU- -5'
28147 5' -55.4 NC_005887.1 + 23270 0.66 0.645788
Target:  5'- gCGCAgcucGugGCGGuUGCcgcaGCCcGCGCCGa -3'
miRNA:   3'- -GCGU----UugUGCC-ACGag--CGGuUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.