miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28147 5' -55.4 NC_005887.1 + 6675 0.73 0.263223
Target:  5'- uGuCGGAUcCGGUGC-CGCCAGCGUCGa -3'
miRNA:   3'- gC-GUUUGuGCCACGaGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 8095 0.71 0.323027
Target:  5'- aGCGcGCGCGcaGCUCGCCGcgcuCGCCGa -3'
miRNA:   3'- gCGUuUGUGCcaCGAGCGGUu---GCGGU- -5'
28147 5' -55.4 NC_005887.1 + 8164 0.66 0.623295
Target:  5'- gGCGAGCGCGGcgaGCUgCGCgcGCGCUu -3'
miRNA:   3'- gCGUUUGUGCCa--CGA-GCGguUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 8503 0.66 0.612055
Target:  5'- uCGCGuuGACGCGGaucGCUCGgCGAUaGCCu -3'
miRNA:   3'- -GCGU--UUGUGCCa--CGAGCgGUUG-CGGu -5'
28147 5' -55.4 NC_005887.1 + 8672 0.73 0.24323
Target:  5'- uGCAccgAGCaACGGcgagaGCUCGCCAGCGUCGa -3'
miRNA:   3'- gCGU---UUG-UGCCa----CGAGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 8837 0.7 0.374173
Target:  5'- uCGUGAAuCGCGGgcaGCUUGUgAACGCCGg -3'
miRNA:   3'- -GCGUUU-GUGCCa--CGAGCGgUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 9072 0.66 0.645788
Target:  5'- aGCGAcaACAacgugagGGUGCaUGCCAGCGCgGg -3'
miRNA:   3'- gCGUU--UGUg------CCACGaGCGGUUGCGgU- -5'
28147 5' -55.4 NC_005887.1 + 9576 0.69 0.460521
Target:  5'- aGCGuGACgACGGUGUUCGgCAGCauGCCGg -3'
miRNA:   3'- gCGU-UUG-UGCCACGAGCgGUUG--CGGU- -5'
28147 5' -55.4 NC_005887.1 + 10188 0.67 0.555218
Target:  5'- aCGCGAACGguuucguCGaGUGCgucgCGUCGAUGCCc -3'
miRNA:   3'- -GCGUUUGU-------GC-CACGa---GCGGUUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 11383 0.66 0.634542
Target:  5'- uCGCGGuuGCGGcGCUCGCUgccgaGCCGg -3'
miRNA:   3'- -GCGUUugUGCCaCGAGCGGuug--CGGU- -5'
28147 5' -55.4 NC_005887.1 + 12194 0.66 0.612055
Target:  5'- gCGCGAcgGCGGccUGCUCGUCcuGGCGCUu -3'
miRNA:   3'- -GCGUUugUGCC--ACGAGCGG--UUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 12440 0.68 0.47076
Target:  5'- uGUuuGCGCGGUGCUgcucggccUGCC-ACGUCAc -3'
miRNA:   3'- gCGuuUGUGCCACGA--------GCGGuUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 12575 0.72 0.307177
Target:  5'- gGCAugcGCAUGGUGUcCGCCGACccgGCCGc -3'
miRNA:   3'- gCGUu--UGUGCCACGaGCGGUUG---CGGU- -5'
28147 5' -55.4 NC_005887.1 + 12624 0.71 0.356529
Target:  5'- gCGCAuGC-CGGcgGC-CGUCGACGCCAc -3'
miRNA:   3'- -GCGUuUGuGCCa-CGaGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 13476 0.68 0.47076
Target:  5'- uCGCAGcaGCGGcuUGC-CGCCGACGuCCGc -3'
miRNA:   3'- -GCGUUugUGCC--ACGaGCGGUUGC-GGU- -5'
28147 5' -55.4 NC_005887.1 + 14647 0.74 0.20704
Target:  5'- aGCcGGCGCGGUGCU-GCCcguCGCCGg -3'
miRNA:   3'- gCGuUUGUGCCACGAgCGGuu-GCGGU- -5'
28147 5' -55.4 NC_005887.1 + 14941 0.66 0.58629
Target:  5'- gCGCAuucugccGCGCGGUGCgCGCUGuugcugcggugugcACGCCc -3'
miRNA:   3'- -GCGUu------UGUGCCACGaGCGGU--------------UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 15626 0.76 0.161528
Target:  5'- aGCAGGCGgcCGG-GCUCGCCGaucaggGCGCCGu -3'
miRNA:   3'- gCGUUUGU--GCCaCGAGCGGU------UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 15628 0.67 0.534407
Target:  5'- aGCGAaucgaGCGCGGUcGCgcgCGCCGAgucguCGCCc -3'
miRNA:   3'- gCGUU-----UGUGCCA-CGa--GCGGUU-----GCGGu -5'
28147 5' -55.4 NC_005887.1 + 16512 0.71 0.331177
Target:  5'- uCGCAGGCcgauCGcGUcGC-CGCCGGCGCCGa -3'
miRNA:   3'- -GCGUUUGu---GC-CA-CGaGCGGUUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.