miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28147 5' -55.4 NC_005887.1 + 39603 0.72 0.291929
Target:  5'- gCGCGGAUugGG-GUacagaGCCGGCGCCAg -3'
miRNA:   3'- -GCGUUUGugCCaCGag---CGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 27099 0.72 0.299478
Target:  5'- aGCGuGCGCGGUcgcgcGCUCGCCGagguuGCGCaCAc -3'
miRNA:   3'- gCGUuUGUGCCA-----CGAGCGGU-----UGCG-GU- -5'
28147 5' -55.4 NC_005887.1 + 18455 0.72 0.307177
Target:  5'- gCGUAGGCcauCGG-GUUCGCgAGCGCCGg -3'
miRNA:   3'- -GCGUUUGu--GCCaCGAGCGgUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 12575 0.72 0.307177
Target:  5'- gGCAugcGCAUGGUGUcCGCCGACccgGCCGc -3'
miRNA:   3'- gCGUu--UGUGCCACGaGCGGUUG---CGGU- -5'
28147 5' -55.4 NC_005887.1 + 8095 0.71 0.323027
Target:  5'- aGCGcGCGCGcaGCUCGCCGcgcuCGCCGa -3'
miRNA:   3'- gCGUuUGUGCcaCGAGCGGUu---GCGGU- -5'
28147 5' -55.4 NC_005887.1 + 28823 0.71 0.331177
Target:  5'- aGCAGaucgGCGCGGUaCUgGCCcggGACGCCAg -3'
miRNA:   3'- gCGUU----UGUGCCAcGAgCGG---UUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 16512 0.71 0.331177
Target:  5'- uCGCAGGCcgauCGcGUcGC-CGCCGGCGCCGa -3'
miRNA:   3'- -GCGUUUGu---GC-CA-CGaGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 12624 0.71 0.356529
Target:  5'- gCGCAuGC-CGGcgGC-CGUCGACGCCAc -3'
miRNA:   3'- -GCGUuUGuGCCa-CGaGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 37160 0.71 0.356529
Target:  5'- uCGCcGAgGCuGUGCUCGCCcgcuucggugcgAACGCCGu -3'
miRNA:   3'- -GCGuUUgUGcCACGAGCGG------------UUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 36976 0.7 0.365278
Target:  5'- gGCGucGCGCGGgucgaGCUCGCCGGCGagCAc -3'
miRNA:   3'- gCGUu-UGUGCCa----CGAGCGGUUGCg-GU- -5'
28147 5' -55.4 NC_005887.1 + 8837 0.7 0.374173
Target:  5'- uCGUGAAuCGCGGgcaGCUUGUgAACGCCGg -3'
miRNA:   3'- -GCGUUU-GUGCCa--CGAGCGgUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 21177 0.7 0.392399
Target:  5'- gGCGAGCACcGUGUUUGCgGcgaccGCGCCGa -3'
miRNA:   3'- gCGUUUGUGcCACGAGCGgU-----UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 21042 0.7 0.392399
Target:  5'- uGCGAGCGUGGcGCcaagCGCCAGCGCgGg -3'
miRNA:   3'- gCGUUUGUGCCaCGa---GCGGUUGCGgU- -5'
28147 5' -55.4 NC_005887.1 + 4502 0.7 0.411193
Target:  5'- gCGCAucGCGCGucUGCUCGCCGACuaCGg -3'
miRNA:   3'- -GCGUu-UGUGCc-ACGAGCGGUUGcgGU- -5'
28147 5' -55.4 NC_005887.1 + 41684 0.69 0.420797
Target:  5'- aGCAGAuccuCACGG-GCcgCGCCGGcCGCCGc -3'
miRNA:   3'- gCGUUU----GUGCCaCGa-GCGGUU-GCGGU- -5'
28147 5' -55.4 NC_005887.1 + 37427 0.69 0.439411
Target:  5'- aCGCcaggugcggagugGAGCGCGGcGCUUGCCuGCGCg- -3'
miRNA:   3'- -GCG-------------UUUGUGCCaCGAGCGGuUGCGgu -5'
28147 5' -55.4 NC_005887.1 + 37059 0.69 0.440404
Target:  5'- gGCcuGCGC-GUGCUCGCCGGCGa-- -3'
miRNA:   3'- gCGuuUGUGcCACGAGCGGUUGCggu -5'
28147 5' -55.4 NC_005887.1 + 34435 0.69 0.459503
Target:  5'- cCGCcucugauACGCGGggcGCUCgucuccagccgugGCCGGCGCCAc -3'
miRNA:   3'- -GCGuu-----UGUGCCa--CGAG-------------CGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 9576 0.69 0.460521
Target:  5'- aGCGuGACgACGGUGUUCGgCAGCauGCCGg -3'
miRNA:   3'- gCGU-UUG-UGCCACGAGCgGUUG--CGGU- -5'
28147 5' -55.4 NC_005887.1 + 19281 0.69 0.460521
Target:  5'- uGCAuACACGacGCUCGUCGuaaccGCGCCGc -3'
miRNA:   3'- gCGUuUGUGCcaCGAGCGGU-----UGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.