miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28147 5' -55.4 NC_005887.1 + 23359 0.66 0.589641
Target:  5'- aCGCAc-CGCGGcGCUCGCaGAUGCUu -3'
miRNA:   3'- -GCGUuuGUGCCaCGAGCGgUUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 14941 0.66 0.58629
Target:  5'- gCGCAuucugccGCGCGGUGCgCGCUGuugcugcggugugcACGCCc -3'
miRNA:   3'- -GCGUu------UGUGCCACGaGCGGU--------------UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 17347 0.67 0.578484
Target:  5'- uGCGcGCGCGGcGC-CGCCcGACGUCu -3'
miRNA:   3'- gCGUuUGUGCCaCGaGCGG-UUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 3003 0.67 0.578484
Target:  5'- cCGUcAACGCGccUGCg-GCCAGCGCCGc -3'
miRNA:   3'- -GCGuUUGUGCc-ACGagCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 40119 0.67 0.578484
Target:  5'- cCGCAGGacgccuacagcgUGCGGUGCgCGCUGcGCGCCGc -3'
miRNA:   3'- -GCGUUU------------GUGCCACGaGCGGU-UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 33588 0.67 0.578484
Target:  5'- gGCGcuCACGGUGaUCGCCGACa--- -3'
miRNA:   3'- gCGUuuGUGCCACgAGCGGUUGcggu -5'
28147 5' -55.4 NC_005887.1 + 31967 0.67 0.578484
Target:  5'- uGCAgcAGCAUGccugaccgGCUgGCCGACGCCc -3'
miRNA:   3'- gCGU--UUGUGCca------CGAgCGGUUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 18054 0.67 0.578484
Target:  5'- gGuCAGGCuguuccaguCGGUGCg-GCCGAUGCCGg -3'
miRNA:   3'- gC-GUUUGu--------GCCACGagCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 35937 0.67 0.567375
Target:  5'- gCGCGGcguCGCGGUGUcUGCCgAGCGCa- -3'
miRNA:   3'- -GCGUUu--GUGCCACGaGCGG-UUGCGgu -5'
28147 5' -55.4 NC_005887.1 + 40926 0.67 0.567375
Target:  5'- gCGCGcGCACcGaGUUCGgCAACGCCGa -3'
miRNA:   3'- -GCGUuUGUGcCaCGAGCgGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 2483 0.67 0.567375
Target:  5'- uCGUcgGCGCGG-GCuUCGCCucgaaGCCAg -3'
miRNA:   3'- -GCGuuUGUGCCaCG-AGCGGuug--CGGU- -5'
28147 5' -55.4 NC_005887.1 + 39235 0.67 0.567375
Target:  5'- gCGCAGuuCACGGaUGCgggUGCCAAUGUg- -3'
miRNA:   3'- -GCGUUu-GUGCC-ACGa--GCGGUUGCGgu -5'
28147 5' -55.4 NC_005887.1 + 6154 0.67 0.55632
Target:  5'- cCGaCGAugGCGGaUG-UCGCCAaGCGCCu -3'
miRNA:   3'- -GC-GUUugUGCC-ACgAGCGGU-UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 10188 0.67 0.555218
Target:  5'- aCGCGAACGguuucguCGaGUGCgucgCGUCGAUGCCc -3'
miRNA:   3'- -GCGUUUGU-------GC-CACGa---GCGGUUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 26356 0.67 0.545328
Target:  5'- gCGCGAACAucacCGGgauCUUGCCAGCGuuCCAg -3'
miRNA:   3'- -GCGUUUGU----GCCac-GAGCGGUUGC--GGU- -5'
28147 5' -55.4 NC_005887.1 + 34708 0.67 0.545328
Target:  5'- gGCAAGC-CGGcGCgccUCGUCGACGCgAa -3'
miRNA:   3'- gCGUUUGuGCCaCG---AGCGGUUGCGgU- -5'
28147 5' -55.4 NC_005887.1 + 31373 0.67 0.545328
Target:  5'- aCGUGAcCAcCGGUGC--GCCGAUGCCGg -3'
miRNA:   3'- -GCGUUuGU-GCCACGagCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 22748 0.67 0.538767
Target:  5'- uCGCGAAguCGGacgacggcuacaacgUGCUCGUuggcuCGACGCCGg -3'
miRNA:   3'- -GCGUUUguGCC---------------ACGAGCG-----GUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 21381 0.67 0.538767
Target:  5'- uGCGgucGGCGCGGUGggCGUgcccgugaaugugggCGACGCCAg -3'
miRNA:   3'- gCGU---UUGUGCCACgaGCG---------------GUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 1480 0.67 0.534407
Target:  5'- aCGCcGACggcguGCGGcGCUCGCgCGGCGCg- -3'
miRNA:   3'- -GCGuUUG-----UGCCaCGAGCG-GUUGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.