miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28147 5' -55.4 NC_005887.1 + 15628 0.67 0.534407
Target:  5'- aGCGAaucgaGCGCGGUcGCgcgCGCCGAgucguCGCCc -3'
miRNA:   3'- gCGUU-----UGUGCCA-CGa--GCGGUU-----GCGGu -5'
28147 5' -55.4 NC_005887.1 + 1480 0.67 0.534407
Target:  5'- aCGCcGACggcguGCGGcGCUCGCgCGGCGCg- -3'
miRNA:   3'- -GCGuUUG-----UGCCaCGAGCG-GUUGCGgu -5'
28147 5' -55.4 NC_005887.1 + 33955 0.67 0.534407
Target:  5'- gGCGAGCACGucgcGUGCggCGuccgucagcaCCGGCGCCGu -3'
miRNA:   3'- gCGUUUGUGC----CACGa-GC----------GGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 41513 0.68 0.523565
Target:  5'- gGCAAGuCgACGGUGCUCGgCAagauccgcgagGCGCUc -3'
miRNA:   3'- gCGUUU-G-UGCCACGAGCgGU-----------UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 3377 0.68 0.523565
Target:  5'- uGCAGggaguggugcGCACGcUGUUCGCCGcGCGCUAc -3'
miRNA:   3'- gCGUU----------UGUGCcACGAGCGGU-UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 19405 0.68 0.523565
Target:  5'- gCGCGAGCAUGGUcaGCUUaUCgAGCGCCu -3'
miRNA:   3'- -GCGUUUGUGCCA--CGAGcGG-UUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 17184 0.68 0.522485
Target:  5'- gCGCGAACGCGGccGCaCGCgGcaauguuGCGCCGc -3'
miRNA:   3'- -GCGUUUGUGCCa-CGaGCGgU-------UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 6523 0.68 0.512808
Target:  5'- gGCAAugACGGca-UCGCCccCGCCGa -3'
miRNA:   3'- gCGUUugUGCCacgAGCGGuuGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 32822 0.68 0.512808
Target:  5'- gGCu-GCAUGGcGCgCGCCGGCGCgCAc -3'
miRNA:   3'- gCGuuUGUGCCaCGaGCGGUUGCG-GU- -5'
28147 5' -55.4 NC_005887.1 + 30546 0.68 0.512808
Target:  5'- gCGCAAcGCACGGgccGCgUCGCgCAcCGCCu -3'
miRNA:   3'- -GCGUU-UGUGCCa--CG-AGCG-GUuGCGGu -5'
28147 5' -55.4 NC_005887.1 + 40208 0.68 0.512808
Target:  5'- gGCGAGCGCGGcGCgcagCGCgCAccgcACGCUg -3'
miRNA:   3'- gCGUUUGUGCCaCGa---GCG-GU----UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 5110 0.68 0.509599
Target:  5'- --uGGACGacgaGGUGCUCGCCAagcucggcaugaccGCGCUg -3'
miRNA:   3'- gcgUUUGUg---CCACGAGCGGU--------------UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 23547 0.68 0.502143
Target:  5'- gGCAAGCAgaucaaGG-GCgUCGCCGGCuGCCGg -3'
miRNA:   3'- gCGUUUGUg-----CCaCG-AGCGGUUG-CGGU- -5'
28147 5' -55.4 NC_005887.1 + 4767 0.68 0.502143
Target:  5'- gCGaCGAGCGCGG-Gaa-GCUGACGCCAg -3'
miRNA:   3'- -GC-GUUUGUGCCaCgagCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 6353 0.68 0.491576
Target:  5'- gGCAGAC-CGGUGCgaaccgacgUGCgGugGCCu -3'
miRNA:   3'- gCGUUUGuGCCACGa--------GCGgUugCGGu -5'
28147 5' -55.4 NC_005887.1 + 23044 0.68 0.491576
Target:  5'- aGCGgcAACGCGccaUGCUCGCgCAGCuGCCGc -3'
miRNA:   3'- gCGU--UUGUGCc--ACGAGCG-GUUG-CGGU- -5'
28147 5' -55.4 NC_005887.1 + 28428 0.68 0.491576
Target:  5'- gCGCAGGCGCucGUGCUCGCgAA-GCUg -3'
miRNA:   3'- -GCGUUUGUGc-CACGAGCGgUUgCGGu -5'
28147 5' -55.4 NC_005887.1 + 18314 0.68 0.481113
Target:  5'- uCGCccGugACGGUGCcCGgCGugGCCGa -3'
miRNA:   3'- -GCGu-UugUGCCACGaGCgGUugCGGU- -5'
28147 5' -55.4 NC_005887.1 + 12440 0.68 0.47076
Target:  5'- uGUuuGCGCGGUGCUgcucggccUGCC-ACGUCAc -3'
miRNA:   3'- gCGuuUGUGCCACGA--------GCGGuUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 13476 0.68 0.47076
Target:  5'- uCGCAGcaGCGGcuUGC-CGCCGACGuCCGc -3'
miRNA:   3'- -GCGUUugUGCC--ACGaGCGGUUGC-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.