miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28147 5' -55.4 NC_005887.1 + 21116 1.09 0.000717
Target:  5'- cCGCAAACACGGUGCUCGCCAACGCCAc -3'
miRNA:   3'- -GCGUUUGUGCCACGAGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 34019 0.77 0.136399
Target:  5'- aCGCcgcACGCGacGUGCUCGCCgAGCGCCGu -3'
miRNA:   3'- -GCGuu-UGUGC--CACGAGCGG-UUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 4855 0.77 0.140322
Target:  5'- cCGCGAGCACGGc-CUCGCCGgcugGCGUCAg -3'
miRNA:   3'- -GCGUUUGUGCCacGAGCGGU----UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 15626 0.76 0.161528
Target:  5'- aGCAGGCGgcCGG-GCUCGCCGaucaggGCGCCGu -3'
miRNA:   3'- gCGUUUGU--GCCaCGAGCGGU------UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 42048 0.75 0.175113
Target:  5'- gGCGGACAUGGaccUGCUCGCCGacuggaucgacgaGCGCUg -3'
miRNA:   3'- gCGUUUGUGCC---ACGAGCGGU-------------UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 17957 0.75 0.175599
Target:  5'- uCGCAcauauGCGCGG-GCUCGCCGGCaucgGCCGc -3'
miRNA:   3'- -GCGUu----UGUGCCaCGAGCGGUUG----CGGU- -5'
28147 5' -55.4 NC_005887.1 + 36117 0.75 0.180527
Target:  5'- gCGCGAGCGCGucgagGCcuugcgccUCGCCGGCGCCGa -3'
miRNA:   3'- -GCGUUUGUGCca---CG--------AGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 18139 0.75 0.190752
Target:  5'- gGCgAAGCGCGG-GC-CGCCGACGUCGu -3'
miRNA:   3'- gCG-UUUGUGCCaCGaGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 17656 0.75 0.196052
Target:  5'- gCGCGAGCGCGGgauugacgggcgUGUUCGUC-GCGCCGg -3'
miRNA:   3'- -GCGUUUGUGCC------------ACGAGCGGuUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 14647 0.74 0.20704
Target:  5'- aGCcGGCGCGGUGCU-GCCcguCGCCGg -3'
miRNA:   3'- gCGuUUGUGCCACGAgCGGuu-GCGGU- -5'
28147 5' -55.4 NC_005887.1 + 22979 0.74 0.236222
Target:  5'- gCGCGAGCAUGGcGCgUUGCCGcugaucgACGCCGg -3'
miRNA:   3'- -GCGUUUGUGCCaCG-AGCGGU-------UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 2555 0.74 0.236852
Target:  5'- aGCAGGC-CGG-GCUCGCCGucgaugauccGCGUCAg -3'
miRNA:   3'- gCGUUUGuGCCaCGAGCGGU----------UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 4602 0.73 0.24323
Target:  5'- gCGCAGAUGCaacagaUGCUCGCCGcgGCGCCGg -3'
miRNA:   3'- -GCGUUUGUGcc----ACGAGCGGU--UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 8672 0.73 0.24323
Target:  5'- uGCAccgAGCaACGGcgagaGCUCGCCAGCGUCGa -3'
miRNA:   3'- gCGU---UUG-UGCCa----CGAGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 6675 0.73 0.263223
Target:  5'- uGuCGGAUcCGGUGC-CGCCAGCGUCGa -3'
miRNA:   3'- gC-GUUUGuGCCACGaGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 41332 0.73 0.270178
Target:  5'- gCGCAggUcgACGGcGCcaUUGCCGACGCCGa -3'
miRNA:   3'- -GCGUuuG--UGCCaCG--AGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 32737 0.72 0.27728
Target:  5'- gGguAGCGCGGcGCUCGCguGCGCg- -3'
miRNA:   3'- gCguUUGUGCCaCGAGCGguUGCGgu -5'
28147 5' -55.4 NC_005887.1 + 2412 0.72 0.291929
Target:  5'- uGCGAGCGCuGGUcGCcCGCCGgauCGCCAu -3'
miRNA:   3'- gCGUUUGUG-CCA-CGaGCGGUu--GCGGU- -5'
28147 5' -55.4 NC_005887.1 + 2742 0.72 0.291929
Target:  5'- aCGCuucACGCGcaccaggugcuuGUGCUCGCCcGCGCCc -3'
miRNA:   3'- -GCGuu-UGUGC------------CACGAGCGGuUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 39603 0.72 0.291929
Target:  5'- gCGCGGAUugGG-GUacagaGCCGGCGCCAg -3'
miRNA:   3'- -GCGUUUGugCCaCGag---CGGUUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.