miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28147 5' -55.4 NC_005887.1 + 6523 0.68 0.512808
Target:  5'- gGCAAugACGGca-UCGCCccCGCCGa -3'
miRNA:   3'- gCGUUugUGCCacgAGCGGuuGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 16512 0.71 0.331177
Target:  5'- uCGCAGGCcgauCGcGUcGC-CGCCGGCGCCGa -3'
miRNA:   3'- -GCGUUUGu---GC-CA-CGaGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 36976 0.7 0.365278
Target:  5'- gGCGucGCGCGGgucgaGCUCGCCGGCGagCAc -3'
miRNA:   3'- gCGUu-UGUGCCa----CGAGCGGUUGCg-GU- -5'
28147 5' -55.4 NC_005887.1 + 8837 0.7 0.374173
Target:  5'- uCGUGAAuCGCGGgcaGCUUGUgAACGCCGg -3'
miRNA:   3'- -GCGUUU-GUGCCa--CGAGCGgUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 4502 0.7 0.411193
Target:  5'- gCGCAucGCGCGucUGCUCGCCGACuaCGg -3'
miRNA:   3'- -GCGUu-UGUGCc-ACGAGCGGUUGcgGU- -5'
28147 5' -55.4 NC_005887.1 + 37427 0.69 0.439411
Target:  5'- aCGCcaggugcggagugGAGCGCGGcGCUUGCCuGCGCg- -3'
miRNA:   3'- -GCG-------------UUUGUGCCaCGAGCGGuUGCGgu -5'
28147 5' -55.4 NC_005887.1 + 28428 0.68 0.491576
Target:  5'- gCGCAGGCGCucGUGCUCGCgAA-GCUg -3'
miRNA:   3'- -GCGUUUGUGc-CACGAGCGgUUgCGGu -5'
28147 5' -55.4 NC_005887.1 + 4767 0.68 0.502143
Target:  5'- gCGaCGAGCGCGG-Gaa-GCUGACGCCAg -3'
miRNA:   3'- -GC-GUUUGUGCCaCgagCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 5110 0.68 0.509599
Target:  5'- --uGGACGacgaGGUGCUCGCCAagcucggcaugaccGCGCUg -3'
miRNA:   3'- gcgUUUGUg---CCACGAGCGGU--------------UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 28823 0.71 0.331177
Target:  5'- aGCAGaucgGCGCGGUaCUgGCCcggGACGCCAg -3'
miRNA:   3'- gCGUU----UGUGCCAcGAgCGG---UUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 8095 0.71 0.323027
Target:  5'- aGCGcGCGCGcaGCUCGCCGcgcuCGCCGa -3'
miRNA:   3'- gCGUuUGUGCcaCGAGCGGUu---GCGGU- -5'
28147 5' -55.4 NC_005887.1 + 12575 0.72 0.307177
Target:  5'- gGCAugcGCAUGGUGUcCGCCGACccgGCCGc -3'
miRNA:   3'- gCGUu--UGUGCCACGaGCGGUUG---CGGU- -5'
28147 5' -55.4 NC_005887.1 + 15626 0.76 0.161528
Target:  5'- aGCAGGCGgcCGG-GCUCGCCGaucaggGCGCCGu -3'
miRNA:   3'- gCGUUUGU--GCCaCGAGCGGU------UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 42048 0.75 0.175113
Target:  5'- gGCGGACAUGGaccUGCUCGCCGacuggaucgacgaGCGCUg -3'
miRNA:   3'- gCGUUUGUGCC---ACGAGCGGU-------------UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 17957 0.75 0.175599
Target:  5'- uCGCAcauauGCGCGG-GCUCGCCGGCaucgGCCGc -3'
miRNA:   3'- -GCGUu----UGUGCCaCGAGCGGUUG----CGGU- -5'
28147 5' -55.4 NC_005887.1 + 18139 0.75 0.190752
Target:  5'- gGCgAAGCGCGG-GC-CGCCGACGUCGu -3'
miRNA:   3'- gCG-UUUGUGCCaCGaGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 14647 0.74 0.20704
Target:  5'- aGCcGGCGCGGUGCU-GCCcguCGCCGg -3'
miRNA:   3'- gCGuUUGUGCCACGAgCGGuu-GCGGU- -5'
28147 5' -55.4 NC_005887.1 + 22979 0.74 0.236222
Target:  5'- gCGCGAGCAUGGcGCgUUGCCGcugaucgACGCCGg -3'
miRNA:   3'- -GCGUUUGUGCCaCG-AGCGGU-------UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 4602 0.73 0.24323
Target:  5'- gCGCAGAUGCaacagaUGCUCGCCGcgGCGCCGg -3'
miRNA:   3'- -GCGUUUGUGcc----ACGAGCGGU--UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 32737 0.72 0.27728
Target:  5'- gGguAGCGCGGcGCUCGCguGCGCg- -3'
miRNA:   3'- gCguUUGUGCCaCGAGCGguUGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.