miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28147 5' -55.4 NC_005887.1 + 32617 0.66 0.645788
Target:  5'- gCGCGAgaACGCGGUGaaaGCCuggcacacGugGCCGg -3'
miRNA:   3'- -GCGUU--UGUGCCACgagCGG--------UugCGGU- -5'
28147 5' -55.4 NC_005887.1 + 35937 0.67 0.567375
Target:  5'- gCGCGGcguCGCGGUGUcUGCCgAGCGCa- -3'
miRNA:   3'- -GCGUUu--GUGCCACGaGCGG-UUGCGgu -5'
28147 5' -55.4 NC_005887.1 + 34708 0.67 0.545328
Target:  5'- gGCAAGC-CGGcGCgccUCGUCGACGCgAa -3'
miRNA:   3'- gCGUUUGuGCCaCG---AGCGGUUGCGgU- -5'
28147 5' -55.4 NC_005887.1 + 34019 0.77 0.136399
Target:  5'- aCGCcgcACGCGacGUGCUCGCCgAGCGCCGu -3'
miRNA:   3'- -GCGuu-UGUGC--CACGAGCGG-UUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 30027 0.66 0.623295
Target:  5'- gCGCG---GCGGUGUUCGC-GGCGCUc -3'
miRNA:   3'- -GCGUuugUGCCACGAGCGgUUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 8503 0.66 0.612055
Target:  5'- uCGCGuuGACGCGGaucGCUCGgCGAUaGCCu -3'
miRNA:   3'- -GCGU--UUGUGCCa--CGAGCgGUUG-CGGu -5'
28147 5' -55.4 NC_005887.1 + 12194 0.66 0.612055
Target:  5'- gCGCGAcgGCGGccUGCUCGUCcuGGCGCUu -3'
miRNA:   3'- -GCGUUugUGCC--ACGAGCGG--UUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 5553 0.66 0.610932
Target:  5'- uGCugcGGC-CGGUGCUgCGCCAucggccuGCGUCGu -3'
miRNA:   3'- gCGu--UUGuGCCACGA-GCGGU-------UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 14941 0.66 0.58629
Target:  5'- gCGCAuucugccGCGCGGUGCgCGCUGuugcugcggugugcACGCCc -3'
miRNA:   3'- -GCGUu------UGUGCCACGaGCGGU--------------UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 2483 0.67 0.567375
Target:  5'- uCGUcgGCGCGG-GCuUCGCCucgaaGCCAg -3'
miRNA:   3'- -GCGuuUGUGCCaCG-AGCGGuug--CGGU- -5'
28147 5' -55.4 NC_005887.1 + 33588 0.67 0.578484
Target:  5'- gGCGcuCACGGUGaUCGCCGACa--- -3'
miRNA:   3'- gCGUuuGUGCCACgAGCGGUUGcggu -5'
28147 5' -55.4 NC_005887.1 + 716 0.66 0.589641
Target:  5'- gGCGGucauGCGCGuGcGCUCGCCGcGCGCUu -3'
miRNA:   3'- gCGUU----UGUGC-CaCGAGCGGU-UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 5496 0.66 0.645788
Target:  5'- aGCGGGCGC-GUGgUCGCgccggucgcugCGGCGCCGc -3'
miRNA:   3'- gCGUUUGUGcCACgAGCG-----------GUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 17347 0.67 0.578484
Target:  5'- uGCGcGCGCGGcGC-CGCCcGACGUCu -3'
miRNA:   3'- gCGUuUGUGCCaCGaGCGG-UUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 11383 0.66 0.634542
Target:  5'- uCGCGGuuGCGGcGCUCGCUgccgaGCCGg -3'
miRNA:   3'- -GCGUUugUGCCaCGAGCGGuug--CGGU- -5'
28147 5' -55.4 NC_005887.1 + 31095 0.66 0.607564
Target:  5'- uGCAAGCcGCGGccUGCgaauaguggccugCGCCG-CGCCAc -3'
miRNA:   3'- gCGUUUG-UGCC--ACGa------------GCGGUuGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 18054 0.67 0.578484
Target:  5'- gGuCAGGCuguuccaguCGGUGCg-GCCGAUGCCGg -3'
miRNA:   3'- gC-GUUUGu--------GCCACGagCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 31373 0.67 0.545328
Target:  5'- aCGUGAcCAcCGGUGC--GCCGAUGCCGg -3'
miRNA:   3'- -GCGUUuGU-GCCACGagCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 8164 0.66 0.623295
Target:  5'- gGCGAGCGCGGcgaGCUgCGCgcGCGCUu -3'
miRNA:   3'- gCGUUUGUGCCa--CGA-GCGguUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 4614 0.66 0.612055
Target:  5'- uGCAGuuccuCGuCGGUGCucaUCGCCucgaccggGACGCCGc -3'
miRNA:   3'- gCGUUu----GU-GCCACG---AGCGG--------UUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.