miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28147 5' -55.4 NC_005887.1 + 716 0.66 0.589641
Target:  5'- gGCGGucauGCGCGuGcGCUCGCCGcGCGCUu -3'
miRNA:   3'- gCGUU----UGUGC-CaCGAGCGGU-UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 733 0.66 0.623295
Target:  5'- uCGUAccAGCAcCGGUGCUgcCGCCAuUGCUg -3'
miRNA:   3'- -GCGU--UUGU-GCCACGA--GCGGUuGCGGu -5'
28147 5' -55.4 NC_005887.1 + 1480 0.67 0.534407
Target:  5'- aCGCcGACggcguGCGGcGCUCGCgCGGCGCg- -3'
miRNA:   3'- -GCGuUUG-----UGCCaCGAGCG-GUUGCGgu -5'
28147 5' -55.4 NC_005887.1 + 2412 0.72 0.291929
Target:  5'- uGCGAGCGCuGGUcGCcCGCCGgauCGCCAu -3'
miRNA:   3'- gCGUUUGUG-CCA-CGaGCGGUu--GCGGU- -5'
28147 5' -55.4 NC_005887.1 + 2483 0.67 0.567375
Target:  5'- uCGUcgGCGCGG-GCuUCGCCucgaaGCCAg -3'
miRNA:   3'- -GCGuuUGUGCCaCG-AGCGGuug--CGGU- -5'
28147 5' -55.4 NC_005887.1 + 2555 0.74 0.236852
Target:  5'- aGCAGGC-CGG-GCUCGCCGucgaugauccGCGUCAg -3'
miRNA:   3'- gCGUUUGuGCCaCGAGCGGU----------UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 2742 0.72 0.291929
Target:  5'- aCGCuucACGCGcaccaggugcuuGUGCUCGCCcGCGCCc -3'
miRNA:   3'- -GCGuu-UGUGC------------CACGAGCGGuUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 3003 0.67 0.578484
Target:  5'- cCGUcAACGCGccUGCg-GCCAGCGCCGc -3'
miRNA:   3'- -GCGuUUGUGCc-ACGagCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 3377 0.68 0.523565
Target:  5'- uGCAGggaguggugcGCACGcUGUUCGCCGcGCGCUAc -3'
miRNA:   3'- gCGUU----------UGUGCcACGAGCGGU-UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 4502 0.7 0.411193
Target:  5'- gCGCAucGCGCGucUGCUCGCCGACuaCGg -3'
miRNA:   3'- -GCGUu-UGUGCc-ACGAGCGGUUGcgGU- -5'
28147 5' -55.4 NC_005887.1 + 4602 0.73 0.24323
Target:  5'- gCGCAGAUGCaacagaUGCUCGCCGcgGCGCCGg -3'
miRNA:   3'- -GCGUUUGUGcc----ACGAGCGGU--UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 4614 0.66 0.612055
Target:  5'- uGCAGuuccuCGuCGGUGCucaUCGCCucgaccggGACGCCGc -3'
miRNA:   3'- gCGUUu----GU-GCCACG---AGCGG--------UUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 4767 0.68 0.502143
Target:  5'- gCGaCGAGCGCGG-Gaa-GCUGACGCCAg -3'
miRNA:   3'- -GC-GUUUGUGCCaCgagCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 4855 0.77 0.140322
Target:  5'- cCGCGAGCACGGc-CUCGCCGgcugGCGUCAg -3'
miRNA:   3'- -GCGUUUGUGCCacGAGCGGU----UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 5110 0.68 0.509599
Target:  5'- --uGGACGacgaGGUGCUCGCCAagcucggcaugaccGCGCUg -3'
miRNA:   3'- gcgUUUGUg---CCACGAGCGGU--------------UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 5496 0.66 0.645788
Target:  5'- aGCGGGCGC-GUGgUCGCgccggucgcugCGGCGCCGc -3'
miRNA:   3'- gCGUUUGUGcCACgAGCG-----------GUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 5553 0.66 0.610932
Target:  5'- uGCugcGGC-CGGUGCUgCGCCAucggccuGCGUCGu -3'
miRNA:   3'- gCGu--UUGuGCCACGA-GCGGU-------UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 6154 0.67 0.55632
Target:  5'- cCGaCGAugGCGGaUG-UCGCCAaGCGCCu -3'
miRNA:   3'- -GC-GUUugUGCC-ACgAGCGGU-UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 6353 0.68 0.491576
Target:  5'- gGCAGAC-CGGUGCgaaccgacgUGCgGugGCCu -3'
miRNA:   3'- gCGUUUGuGCCACGa--------GCGgUugCGGu -5'
28147 5' -55.4 NC_005887.1 + 6523 0.68 0.512808
Target:  5'- gGCAAugACGGca-UCGCCccCGCCGa -3'
miRNA:   3'- gCGUUugUGCCacgAGCGGuuGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.