miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28147 5' -55.4 NC_005887.1 + 42048 0.75 0.175113
Target:  5'- gGCGGACAUGGaccUGCUCGCCGacuggaucgacgaGCGCUg -3'
miRNA:   3'- gCGUUUGUGCC---ACGAGCGGU-------------UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 41684 0.69 0.420797
Target:  5'- aGCAGAuccuCACGG-GCcgCGCCGGcCGCCGc -3'
miRNA:   3'- gCGUUU----GUGCCaCGa-GCGGUU-GCGGU- -5'
28147 5' -55.4 NC_005887.1 + 41553 0.66 0.634542
Target:  5'- gCGCGcACGCGaaGUcaGCCAGCGCCGa -3'
miRNA:   3'- -GCGUuUGUGCcaCGagCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 41513 0.68 0.523565
Target:  5'- gGCAAGuCgACGGUGCUCGgCAagauccgcgagGCGCUc -3'
miRNA:   3'- gCGUUU-G-UGCCACGAGCgGU-----------UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 41332 0.73 0.270178
Target:  5'- gCGCAggUcgACGGcGCcaUUGCCGACGCCGa -3'
miRNA:   3'- -GCGUuuG--UGCCaCG--AGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 40926 0.67 0.567375
Target:  5'- gCGCGcGCACcGaGUUCGgCAACGCCGa -3'
miRNA:   3'- -GCGUuUGUGcCaCGAGCgGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 40208 0.68 0.512808
Target:  5'- gGCGAGCGCGGcGCgcagCGCgCAccgcACGCUg -3'
miRNA:   3'- gCGUUUGUGCCaCGa---GCG-GU----UGCGGu -5'
28147 5' -55.4 NC_005887.1 + 40119 0.67 0.578484
Target:  5'- cCGCAGGacgccuacagcgUGCGGUGCgCGCUGcGCGCCGc -3'
miRNA:   3'- -GCGUUU------------GUGCCACGaGCGGU-UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 39603 0.72 0.291929
Target:  5'- gCGCGGAUugGG-GUacagaGCCGGCGCCAg -3'
miRNA:   3'- -GCGUUUGugCCaCGag---CGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 39235 0.67 0.567375
Target:  5'- gCGCAGuuCACGGaUGCgggUGCCAAUGUg- -3'
miRNA:   3'- -GCGUUu-GUGCC-ACGa--GCGGUUGCGgu -5'
28147 5' -55.4 NC_005887.1 + 38294 0.66 0.634542
Target:  5'- aCGCAAcgguCAgGGUGCcgUCGCCGuUGUCGa -3'
miRNA:   3'- -GCGUUu---GUgCCACG--AGCGGUuGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 37427 0.69 0.439411
Target:  5'- aCGCcaggugcggagugGAGCGCGGcGCUUGCCuGCGCg- -3'
miRNA:   3'- -GCG-------------UUUGUGCCaCGAGCGGuUGCGgu -5'
28147 5' -55.4 NC_005887.1 + 37160 0.71 0.356529
Target:  5'- uCGCcGAgGCuGUGCUCGCCcgcuucggugcgAACGCCGu -3'
miRNA:   3'- -GCGuUUgUGcCACGAGCGG------------UUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 37059 0.69 0.440404
Target:  5'- gGCcuGCGC-GUGCUCGCCGGCGa-- -3'
miRNA:   3'- gCGuuUGUGcCACGAGCGGUUGCggu -5'
28147 5' -55.4 NC_005887.1 + 36976 0.7 0.365278
Target:  5'- gGCGucGCGCGGgucgaGCUCGCCGGCGagCAc -3'
miRNA:   3'- gCGUu-UGUGCCa----CGAGCGGUUGCg-GU- -5'
28147 5' -55.4 NC_005887.1 + 36117 0.75 0.180527
Target:  5'- gCGCGAGCGCGucgagGCcuugcgccUCGCCGGCGCCGa -3'
miRNA:   3'- -GCGUUUGUGCca---CG--------AGCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 35937 0.67 0.567375
Target:  5'- gCGCGGcguCGCGGUGUcUGCCgAGCGCa- -3'
miRNA:   3'- -GCGUUu--GUGCCACGaGCGG-UUGCGgu -5'
28147 5' -55.4 NC_005887.1 + 34708 0.67 0.545328
Target:  5'- gGCAAGC-CGGcGCgccUCGUCGACGCgAa -3'
miRNA:   3'- gCGUUUGuGCCaCG---AGCGGUUGCGgU- -5'
28147 5' -55.4 NC_005887.1 + 34600 0.66 0.622171
Target:  5'- gCGUAGAUGCGGccuuccuUGCcCGCCAGCcauucGCCGu -3'
miRNA:   3'- -GCGUUUGUGCC-------ACGaGCGGUUG-----CGGU- -5'
28147 5' -55.4 NC_005887.1 + 34435 0.69 0.459503
Target:  5'- cCGCcucugauACGCGGggcGCUCgucuccagccgugGCCGGCGCCAc -3'
miRNA:   3'- -GCGuu-----UGUGCCa--CGAG-------------CGGUUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.