miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28148 3' -51.3 NC_005887.1 + 29796 0.67 0.760722
Target:  5'- cAGCUCGGGCcaguaGCUGgaagucugcggGugUGCGCGGCg -3'
miRNA:   3'- -UCGAGCUCGcg---UGAC-----------UugAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 17550 0.67 0.749784
Target:  5'- cGgUCGGcGCGUACUgGAACUacgugaccgGCGCGACg -3'
miRNA:   3'- uCgAGCU-CGCGUGA-CUUGA---------UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 32667 0.67 0.786343
Target:  5'- aAGCUCGugugcgggcugcacGUGCACUGGAacaUGCGCGucACg -3'
miRNA:   3'- -UCGAGCu-------------CGCGUGACUUg--AUGUGU--UG- -5'
28148 3' -51.3 NC_005887.1 + 9787 0.67 0.771512
Target:  5'- cAGCUgcCGGGCGUugaGCU--GCUGCACGAUc -3'
miRNA:   3'- -UCGA--GCUCGCG---UGAcuUGAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 16064 0.67 0.771512
Target:  5'- cGGCUCGcGGCGgGuCUGcGCgcGCACGACa -3'
miRNA:   3'- -UCGAGC-UCGCgU-GACuUGa-UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 12402 0.67 0.749784
Target:  5'- uGGCcggCGAGCGacguacgcaguuCGCUGAGCUGCA--GCg -3'
miRNA:   3'- -UCGa--GCUCGC------------GUGACUUGAUGUguUG- -5'
28148 3' -51.3 NC_005887.1 + 23475 0.67 0.792593
Target:  5'- gAGCugaUCGAcGCGCuGCUGcGGCUGC-CAGCg -3'
miRNA:   3'- -UCG---AGCU-CGCG-UGAC-UUGAUGuGUUG- -5'
28148 3' -51.3 NC_005887.1 + 32734 0.68 0.689889
Target:  5'- uGC-CGaAGCGCGCacgcgcgacaccggUGAGCUGCACAc- -3'
miRNA:   3'- uCGaGC-UCGCGUG--------------ACUUGAUGUGUug -5'
28148 3' -51.3 NC_005887.1 + 4017 0.68 0.737596
Target:  5'- cGUUCcGGCGCGCUGAAUUGggguggcCugAACg -3'
miRNA:   3'- uCGAGcUCGCGUGACUUGAU-------GugUUG- -5'
28148 3' -51.3 NC_005887.1 + 41925 0.68 0.716215
Target:  5'- uGCU-GAGCGgcucgcaGCUGAGCUGCcCGGCg -3'
miRNA:   3'- uCGAgCUCGCg------UGACUUGAUGuGUUG- -5'
28148 3' -51.3 NC_005887.1 + 11690 0.68 0.716215
Target:  5'- gAGCUCGGcauuGCGCACgcu-CUGCACcuGCg -3'
miRNA:   3'- -UCGAGCU----CGCGUGacuuGAUGUGu-UG- -5'
28148 3' -51.3 NC_005887.1 + 15425 0.68 0.716215
Target:  5'- uGCUCGGGCGuCACgugGAACgugGC-CGAg -3'
miRNA:   3'- uCGAGCUCGC-GUGa--CUUGa--UGuGUUg -5'
28148 3' -51.3 NC_005887.1 + 27527 0.68 0.716215
Target:  5'- cAGCUCGAGauucCGCGCUcGAACguguggGC-CGGCa -3'
miRNA:   3'- -UCGAGCUC----GCGUGA-CUUGa-----UGuGUUG- -5'
28148 3' -51.3 NC_005887.1 + 15596 0.69 0.681803
Target:  5'- aAGCUgagaCGcAGCGCAC-GGGCgucGCGCAGCa -3'
miRNA:   3'- -UCGA----GC-UCGCGUGaCUUGa--UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 11548 0.69 0.64691
Target:  5'- cAGCUCG-GCGCGC--AGC-GCGCGGCg -3'
miRNA:   3'- -UCGAGCuCGCGUGacUUGaUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 13091 0.69 0.658573
Target:  5'- cGCUCGAuCGCGgaGuGCUGCAgGGCg -3'
miRNA:   3'- uCGAGCUcGCGUgaCuUGAUGUgUUG- -5'
28148 3' -51.3 NC_005887.1 + 4249 0.69 0.62355
Target:  5'- cGCUCGGcCGCACgcagucUGAACUGCuCGGCc -3'
miRNA:   3'- uCGAGCUcGCGUG------ACUUGAUGuGUUG- -5'
28148 3' -51.3 NC_005887.1 + 16243 0.69 0.630559
Target:  5'- cGGCcggCGAGCGCACgggcaccgucgccGAGCUgAUGCAGCa -3'
miRNA:   3'- -UCGa--GCUCGCGUGa------------CUUGA-UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 28538 0.69 0.635232
Target:  5'- cGCUCacGCGCGCcGGGCUGCugAAUu -3'
miRNA:   3'- uCGAGcuCGCGUGaCUUGAUGugUUG- -5'
28148 3' -51.3 NC_005887.1 + 3470 0.69 0.62355
Target:  5'- uGUUCGggccuGGCGCGCUGAugaucgaGCACGACg -3'
miRNA:   3'- uCGAGC-----UCGCGUGACUuga----UGUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.