miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28148 3' -51.3 NC_005887.1 + 13373 0.66 0.832393
Target:  5'- cGGCgauggCGcuCGCGCUGAagGCcgGCGCGGCg -3'
miRNA:   3'- -UCGa----GCucGCGUGACU--UGa-UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 13434 0.66 0.819838
Target:  5'- cAGCgCGAGCGCcaucGCcGGgcucuuuuccuuccACUGCGCGGCg -3'
miRNA:   3'- -UCGaGCUCGCG----UGaCU--------------UGAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 13695 0.66 0.826647
Target:  5'- uGCUCGGcugagugcggccgccGCGCGCcGcGCUGCcaGCAGCg -3'
miRNA:   3'- uCGAGCU---------------CGCGUGaCuUGAUG--UGUUG- -5'
28148 3' -51.3 NC_005887.1 + 14696 0.66 0.802857
Target:  5'- gGGCUCGucgcGGCGgGC-GGGCcggGCGCGGCg -3'
miRNA:   3'- -UCGAGC----UCGCgUGaCUUGa--UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 15066 0.75 0.348104
Target:  5'- cAGCUCGGGCgGCACgccugcGGcCUGCGCGGCc -3'
miRNA:   3'- -UCGAGCUCG-CGUGa-----CUuGAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 15425 0.68 0.716215
Target:  5'- uGCUCGGGCGuCACgugGAACgugGC-CGAg -3'
miRNA:   3'- uCGAGCUCGC-GUGa--CUUGa--UGuGUUg -5'
28148 3' -51.3 NC_005887.1 + 15596 0.69 0.681803
Target:  5'- aAGCUgagaCGcAGCGCAC-GGGCgucGCGCAGCa -3'
miRNA:   3'- -UCGA----GC-UCGCGUGaCUUGa--UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 15722 0.71 0.508928
Target:  5'- gAGCUCG-GCGCGCaucuGCgACACGGCg -3'
miRNA:   3'- -UCGAGCuCGCGUGacu-UGaUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 15889 0.73 0.423984
Target:  5'- cAGCUCG-GUGCGCUcGAC-GCGCAGCu -3'
miRNA:   3'- -UCGAGCuCGCGUGAcUUGaUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 15950 0.79 0.186262
Target:  5'- cGCgUCGAGCGCACcGAGCUGCugGuGCg -3'
miRNA:   3'- uCG-AGCUCGCGUGaCUUGAUGugU-UG- -5'
28148 3' -51.3 NC_005887.1 + 16064 0.67 0.771512
Target:  5'- cGGCUCGcGGCGgGuCUGcGCgcGCACGACa -3'
miRNA:   3'- -UCGAGC-UCGCgU-GACuUGa-UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 16243 0.69 0.630559
Target:  5'- cGGCcggCGAGCGCACgggcaccgucgccGAGCUgAUGCAGCa -3'
miRNA:   3'- -UCGa--GCUCGCGUGa------------CUUGA-UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 17172 0.66 0.822769
Target:  5'- aGGCguggGAGCGCGC-GAACgcggccgcACGCGGCa -3'
miRNA:   3'- -UCGag--CUCGCGUGaCUUGa-------UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 17311 0.67 0.771512
Target:  5'- cGGUUCG-GCGCACcGcguGCUGCACuuccGCg -3'
miRNA:   3'- -UCGAGCuCGCGUGaCu--UGAUGUGu---UG- -5'
28148 3' -51.3 NC_005887.1 + 17550 0.67 0.749784
Target:  5'- cGgUCGGcGCGUACUgGAACUacgugaccgGCGCGACg -3'
miRNA:   3'- uCgAGCU-CGCGUGA-CUUGA---------UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 17607 0.7 0.565491
Target:  5'- cGCUCGcGCGCAagaUGGaaacGCUgcGCACGACg -3'
miRNA:   3'- uCGAGCuCGCGUg--ACU----UGA--UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 21192 1.09 0.0015
Target:  5'- cAGCUCGAGCGCACUGAACUACACAACc -3'
miRNA:   3'- -UCGAGCUCGCGUGACUUGAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 21821 0.66 0.841779
Target:  5'- cGCUgcCGGGCGCGCcGAAUgaaACGGCc -3'
miRNA:   3'- uCGA--GCUCGCGUGaCUUGaugUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 22782 0.73 0.444447
Target:  5'- uGGCUCGAcgccgGCGCggccGCUguuguucacGAGCUACGCGGCg -3'
miRNA:   3'- -UCGAGCU-----CGCG----UGA---------CUUGAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 23475 0.67 0.792593
Target:  5'- gAGCugaUCGAcGCGCuGCUGcGGCUGC-CAGCg -3'
miRNA:   3'- -UCG---AGCU-CGCG-UGAC-UUGAUGuGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.