Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28148 | 3' | -51.3 | NC_005887.1 | + | 495 | 0.72 | 0.48696 |
Target: 5'- gGGUUCGAGCGCAgcaacagcGGGCgGCGCGGCg -3' miRNA: 3'- -UCGAGCUCGCGUga------CUUGaUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 1307 | 0.71 | 0.554022 |
Target: 5'- cGUUUucGCGUGCUGAGCgccGCGCAGCg -3' miRNA: 3'- uCGAGcuCGCGUGACUUGa--UGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 1360 | 0.67 | 0.792593 |
Target: 5'- cGCUCGAGCGCuacaucCUGucCcGCGCGucGCg -3' miRNA: 3'- uCGAGCUCGCGu-----GACuuGaUGUGU--UG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 1464 | 0.66 | 0.81292 |
Target: 5'- cGCUgcCGAGCGgGCccaugaUGAACgaGCGCGACg -3' miRNA: 3'- uCGA--GCUCGCgUG------ACUUGa-UGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 1695 | 0.75 | 0.348104 |
Target: 5'- gAGCaCGAGCGCA---AGCUGCGCGGCa -3' miRNA: 3'- -UCGaGCUCGCGUgacUUGAUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 3236 | 0.66 | 0.840851 |
Target: 5'- uGUUCGAuucgaccGCGcCGCUcGcGCUGCGCAACu -3' miRNA: 3'- uCGAGCU-------CGC-GUGA-CuUGAUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 3470 | 0.69 | 0.62355 |
Target: 5'- uGUUCGggccuGGCGCGCUGAugaucgaGCACGACg -3' miRNA: 3'- uCGAGC-----UCGCGUGACUuga----UGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 4017 | 0.68 | 0.737596 |
Target: 5'- cGUUCcGGCGCGCUGAAUUGggguggcCugAACg -3' miRNA: 3'- uCGAGcUCGCGUGACUUGAU-------GugUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 4103 | 0.69 | 0.670208 |
Target: 5'- cGGCaUCGAGUucGCGCaGGAC-ACGCGGCa -3' miRNA: 3'- -UCG-AGCUCG--CGUGaCUUGaUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 4249 | 0.69 | 0.62355 |
Target: 5'- cGCUCGGcCGCACgcagucUGAACUGCuCGGCc -3' miRNA: 3'- uCGAGCUcGCGUG------ACUUGAUGuGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 7477 | 0.67 | 0.77044 |
Target: 5'- cGCgaaCGAGCGCuaccugcGCuUGAACUACACccucGGCg -3' miRNA: 3'- uCGa--GCUCGCG-------UG-ACUUGAUGUG----UUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 8173 | 0.71 | 0.531301 |
Target: 5'- cGGCgccucggCGAGCGCGgcGAGCUGCGCGcGCg -3' miRNA: 3'- -UCGa------GCUCGCGUgaCUUGAUGUGU-UG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 9787 | 0.67 | 0.771512 |
Target: 5'- cAGCUgcCGGGCGUugaGCU--GCUGCACGAUc -3' miRNA: 3'- -UCGA--GCUCGCG---UGAcuUGAUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 11548 | 0.69 | 0.64691 |
Target: 5'- cAGCUCG-GCGCGC--AGC-GCGCGGCg -3' miRNA: 3'- -UCGAGCuCGCGUGacUUGaUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 11609 | 0.66 | 0.81292 |
Target: 5'- cGCgCGcuGCGCGCcGAGCUGCugauCAGCu -3' miRNA: 3'- uCGaGCu-CGCGUGaCUUGAUGu---GUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 11690 | 0.68 | 0.716215 |
Target: 5'- gAGCUCGGcauuGCGCACgcu-CUGCACcuGCg -3' miRNA: 3'- -UCGAGCU----CGCGUGacuuGAUGUGu-UG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 12402 | 0.67 | 0.749784 |
Target: 5'- uGGCcggCGAGCGacguacgcaguuCGCUGAGCUGCA--GCg -3' miRNA: 3'- -UCGa--GCUCGC------------GUGACUUGAUGUguUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 12796 | 0.76 | 0.274945 |
Target: 5'- cGGCgcgaUCGAGCGCAuuCUGcuGCUGCGCGACc -3' miRNA: 3'- -UCG----AGCUCGCGU--GACu-UGAUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 12886 | 0.66 | 0.832393 |
Target: 5'- uGC-CGuGCGCgaGCUGAucgGCACGGCg -3' miRNA: 3'- uCGaGCuCGCG--UGACUugaUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 13091 | 0.69 | 0.658573 |
Target: 5'- cGCUCGAuCGCGgaGuGCUGCAgGGCg -3' miRNA: 3'- uCGAGCUcGCGUgaCuUGAUGUgUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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