miRNA display CGI


Results 41 - 60 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28148 3' -51.3 NC_005887.1 + 24421 0.7 0.616545
Target:  5'- gAGCUCGuucguGCGCACgcaggucgcgagcaGGAC-ACGCAGCa -3'
miRNA:   3'- -UCGAGCu----CGCGUGa-------------CUUGaUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 27416 0.69 0.635232
Target:  5'- cGCUCGucuGCGCGCc--GCUGCGCGugGCg -3'
miRNA:   3'- uCGAGCu--CGCGUGacuUGAUGUGU--UG- -5'
28148 3' -51.3 NC_005887.1 + 27527 0.68 0.716215
Target:  5'- cAGCUCGAGauucCGCGCUcGAACguguggGC-CGGCa -3'
miRNA:   3'- -UCGAGCUC----GCGUGA-CUUGa-----UGuGUUG- -5'
28148 3' -51.3 NC_005887.1 + 27648 0.66 0.826647
Target:  5'- cGCUCGAcggcGCGCucgcgcuguacuuccGCUGcguGCUGCACAc- -3'
miRNA:   3'- uCGAGCU----CGCG---------------UGACu--UGAUGUGUug -5'
28148 3' -51.3 NC_005887.1 + 27649 0.71 0.518949
Target:  5'- cAGUU-GuGCGCGCUGAGCUgccgcgcGCGCGGCu -3'
miRNA:   3'- -UCGAgCuCGCGUGACUUGA-------UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 28538 0.69 0.635232
Target:  5'- cGCUCacGCGCGCcGGGCUGCugAAUu -3'
miRNA:   3'- uCGAGcuCGCGUGaCUUGAUGugUUG- -5'
28148 3' -51.3 NC_005887.1 + 29796 0.67 0.760722
Target:  5'- cAGCUCGGGCcaguaGCUGgaagucugcggGugUGCGCGGCg -3'
miRNA:   3'- -UCGAGCUCGcg---UGAC-----------UugAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 30418 0.69 0.670208
Target:  5'- gAGCUCGgcaucGGgGCAUUGAaaaccgGCUGCGCGGa -3'
miRNA:   3'- -UCGAGC-----UCgCGUGACU------UGAUGUGUUg -5'
28148 3' -51.3 NC_005887.1 + 30707 0.66 0.839921
Target:  5'- cGCUCGAGCGuCGCaucaacgauccgGAucugccggacgcGCUGCGCGAg -3'
miRNA:   3'- uCGAGCUCGC-GUGa-----------CU------------UGAUGUGUUg -5'
28148 3' -51.3 NC_005887.1 + 30994 0.72 0.476146
Target:  5'- cGC-CGAGCGCGCUG---UGCACAAg -3'
miRNA:   3'- uCGaGCUCGCGUGACuugAUGUGUUg -5'
28148 3' -51.3 NC_005887.1 + 31289 0.66 0.832393
Target:  5'- uGUUCGAucGCGUcguGCUGAAgcACGCGGCg -3'
miRNA:   3'- uCGAGCU--CGCG---UGACUUgaUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 32667 0.67 0.786343
Target:  5'- aAGCUCGugugcgggcugcacGUGCACUGGAacaUGCGCGucACg -3'
miRNA:   3'- -UCGAGCu-------------CGCGUGACUUg--AUGUGU--UG- -5'
28148 3' -51.3 NC_005887.1 + 32734 0.68 0.689889
Target:  5'- uGC-CGaAGCGCGCacgcgcgacaccggUGAGCUGCACAc- -3'
miRNA:   3'- uCGaGC-UCGCGUG--------------ACUUGAUGUGUug -5'
28148 3' -51.3 NC_005887.1 + 33812 0.66 0.802857
Target:  5'- uGCUCGugaaggccGGCGCGCUGAuccuCgcCGCGAUc -3'
miRNA:   3'- uCGAGC--------UCGCGUGACUu---GauGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 35656 0.67 0.78214
Target:  5'- gAGCUCGA-CGCugUcGAC-AUACAGCa -3'
miRNA:   3'- -UCGAGCUcGCGugAcUUGaUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 38403 0.7 0.588602
Target:  5'- cGGUUCGgucAGUGCGCUGcgUUAgGCAACg -3'
miRNA:   3'- -UCGAGC---UCGCGUGACuuGAUgUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 40159 0.75 0.313968
Target:  5'- cGCUCGccGCGUG-UGAGCUGCGCGACg -3'
miRNA:   3'- uCGAGCu-CGCGUgACUUGAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 40558 0.66 0.821795
Target:  5'- cGCUCGcgcacgaguucucGGCGCGCUcGAGCaagUACAACc -3'
miRNA:   3'- uCGAGC-------------UCGCGUGA-CUUGau-GUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 40631 0.8 0.161262
Target:  5'- uGCUCGAGCGCGCcgaGAACUcguGCGCGAg -3'
miRNA:   3'- uCGAGCUCGCGUGa--CUUGA---UGUGUUg -5'
28148 3' -51.3 NC_005887.1 + 40831 0.66 0.841779
Target:  5'- cGGCUCGgcGGCGCGCgGcGCgccaACGGCg -3'
miRNA:   3'- -UCGAGC--UCGCGUGaCuUGaug-UGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.