Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28148 | 3' | -51.3 | NC_005887.1 | + | 15889 | 0.73 | 0.423984 |
Target: 5'- cAGCUCG-GUGCGCUcGAC-GCGCAGCu -3' miRNA: 3'- -UCGAGCuCGCGUGAcUUGaUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 22782 | 0.73 | 0.444447 |
Target: 5'- uGGCUCGAcgccgGCGCggccGCUguuguucacGAGCUACGCGGCg -3' miRNA: 3'- -UCGAGCU-----CGCG----UGA---------CUUGAUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 27649 | 0.71 | 0.518949 |
Target: 5'- cAGUU-GuGCGCGCUGAGCUgccgcgcGCGCGGCu -3' miRNA: 3'- -UCGAgCuCGCGUGACUUGA-------UGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 17607 | 0.7 | 0.565491 |
Target: 5'- cGCUCGcGCGCAagaUGGaaacGCUgcGCACGACg -3' miRNA: 3'- uCGAGCuCGCGUg--ACU----UGA--UGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 38403 | 0.7 | 0.588602 |
Target: 5'- cGGUUCGgucAGUGCGCUGcgUUAgGCAACg -3' miRNA: 3'- -UCGAGC---UCGCGUGACuuGAUgUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 24421 | 0.7 | 0.616545 |
Target: 5'- gAGCUCGuucguGCGCACgcaggucgcgagcaGGAC-ACGCAGCa -3' miRNA: 3'- -UCGAGCu----CGCGUGa-------------CUUGaUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 13091 | 0.69 | 0.658573 |
Target: 5'- cGCUCGAuCGCGgaGuGCUGCAgGGCg -3' miRNA: 3'- uCGAGCUcGCGUgaCuUGAUGUgUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 11548 | 0.69 | 0.64691 |
Target: 5'- cAGCUCG-GCGCGC--AGC-GCGCGGCg -3' miRNA: 3'- -UCGAGCuCGCGUGacUUGaUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 28538 | 0.69 | 0.635232 |
Target: 5'- cGCUCacGCGCGCcGGGCUGCugAAUu -3' miRNA: 3'- uCGAGcuCGCGUGaCUUGAUGugUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 16243 | 0.69 | 0.630559 |
Target: 5'- cGGCcggCGAGCGCACgggcaccgucgccGAGCUgAUGCAGCa -3' miRNA: 3'- -UCGa--GCUCGCGUGa------------CUUGA-UGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 4249 | 0.69 | 0.62355 |
Target: 5'- cGCUCGGcCGCACgcagucUGAACUGCuCGGCc -3' miRNA: 3'- uCGAGCUcGCGUG------ACUUGAUGuGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 3470 | 0.69 | 0.62355 |
Target: 5'- uGUUCGggccuGGCGCGCUGAugaucgaGCACGACg -3' miRNA: 3'- uCGAGC-----UCGCGUGACUuga----UGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 1464 | 0.66 | 0.81292 |
Target: 5'- cGCUgcCGAGCGgGCccaugaUGAACgaGCGCGACg -3' miRNA: 3'- uCGA--GCUCGCgUG------ACUUGa-UGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 11609 | 0.66 | 0.81292 |
Target: 5'- cGCgCGcuGCGCGCcGAGCUGCugauCAGCu -3' miRNA: 3'- uCGaGCu-CGCGUGaCUUGAUGu---GUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 13434 | 0.66 | 0.819838 |
Target: 5'- cAGCgCGAGCGCcaucGCcGGgcucuuuuccuuccACUGCGCGGCg -3' miRNA: 3'- -UCGaGCUCGCG----UGaCU--------------UGAUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 13695 | 0.66 | 0.826647 |
Target: 5'- uGCUCGGcugagugcggccgccGCGCGCcGcGCUGCcaGCAGCg -3' miRNA: 3'- uCGAGCU---------------CGCGUGaCuUGAUG--UGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 27648 | 0.66 | 0.826647 |
Target: 5'- cGCUCGAcggcGCGCucgcgcuguacuuccGCUGcguGCUGCACAc- -3' miRNA: 3'- uCGAGCU----CGCG---------------UGACu--UGAUGUGUug -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 31289 | 0.66 | 0.832393 |
Target: 5'- uGUUCGAucGCGUcguGCUGAAgcACGCGGCg -3' miRNA: 3'- uCGAGCU--CGCG---UGACUUgaUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 30707 | 0.66 | 0.839921 |
Target: 5'- cGCUCGAGCGuCGCaucaacgauccgGAucugccggacgcGCUGCGCGAg -3' miRNA: 3'- uCGAGCUCGC-GUGa-----------CU------------UGAUGUGUUg -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 40631 | 0.8 | 0.161262 |
Target: 5'- uGCUCGAGCGCGCcgaGAACUcguGCGCGAg -3' miRNA: 3'- uCGAGCUCGCGUGa--CUUGA---UGUGUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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