miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28148 3' -51.3 NC_005887.1 + 15889 0.73 0.423984
Target:  5'- cAGCUCG-GUGCGCUcGAC-GCGCAGCu -3'
miRNA:   3'- -UCGAGCuCGCGUGAcUUGaUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 22782 0.73 0.444447
Target:  5'- uGGCUCGAcgccgGCGCggccGCUguuguucacGAGCUACGCGGCg -3'
miRNA:   3'- -UCGAGCU-----CGCG----UGA---------CUUGAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 27649 0.71 0.518949
Target:  5'- cAGUU-GuGCGCGCUGAGCUgccgcgcGCGCGGCu -3'
miRNA:   3'- -UCGAgCuCGCGUGACUUGA-------UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 17607 0.7 0.565491
Target:  5'- cGCUCGcGCGCAagaUGGaaacGCUgcGCACGACg -3'
miRNA:   3'- uCGAGCuCGCGUg--ACU----UGA--UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 38403 0.7 0.588602
Target:  5'- cGGUUCGgucAGUGCGCUGcgUUAgGCAACg -3'
miRNA:   3'- -UCGAGC---UCGCGUGACuuGAUgUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 24421 0.7 0.616545
Target:  5'- gAGCUCGuucguGCGCACgcaggucgcgagcaGGAC-ACGCAGCa -3'
miRNA:   3'- -UCGAGCu----CGCGUGa-------------CUUGaUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 13091 0.69 0.658573
Target:  5'- cGCUCGAuCGCGgaGuGCUGCAgGGCg -3'
miRNA:   3'- uCGAGCUcGCGUgaCuUGAUGUgUUG- -5'
28148 3' -51.3 NC_005887.1 + 11548 0.69 0.64691
Target:  5'- cAGCUCG-GCGCGC--AGC-GCGCGGCg -3'
miRNA:   3'- -UCGAGCuCGCGUGacUUGaUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 28538 0.69 0.635232
Target:  5'- cGCUCacGCGCGCcGGGCUGCugAAUu -3'
miRNA:   3'- uCGAGcuCGCGUGaCUUGAUGugUUG- -5'
28148 3' -51.3 NC_005887.1 + 16243 0.69 0.630559
Target:  5'- cGGCcggCGAGCGCACgggcaccgucgccGAGCUgAUGCAGCa -3'
miRNA:   3'- -UCGa--GCUCGCGUGa------------CUUGA-UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 4249 0.69 0.62355
Target:  5'- cGCUCGGcCGCACgcagucUGAACUGCuCGGCc -3'
miRNA:   3'- uCGAGCUcGCGUG------ACUUGAUGuGUUG- -5'
28148 3' -51.3 NC_005887.1 + 3470 0.69 0.62355
Target:  5'- uGUUCGggccuGGCGCGCUGAugaucgaGCACGACg -3'
miRNA:   3'- uCGAGC-----UCGCGUGACUuga----UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 1464 0.66 0.81292
Target:  5'- cGCUgcCGAGCGgGCccaugaUGAACgaGCGCGACg -3'
miRNA:   3'- uCGA--GCUCGCgUG------ACUUGa-UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 11609 0.66 0.81292
Target:  5'- cGCgCGcuGCGCGCcGAGCUGCugauCAGCu -3'
miRNA:   3'- uCGaGCu-CGCGUGaCUUGAUGu---GUUG- -5'
28148 3' -51.3 NC_005887.1 + 13434 0.66 0.819838
Target:  5'- cAGCgCGAGCGCcaucGCcGGgcucuuuuccuuccACUGCGCGGCg -3'
miRNA:   3'- -UCGaGCUCGCG----UGaCU--------------UGAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 13695 0.66 0.826647
Target:  5'- uGCUCGGcugagugcggccgccGCGCGCcGcGCUGCcaGCAGCg -3'
miRNA:   3'- uCGAGCU---------------CGCGUGaCuUGAUG--UGUUG- -5'
28148 3' -51.3 NC_005887.1 + 27648 0.66 0.826647
Target:  5'- cGCUCGAcggcGCGCucgcgcuguacuuccGCUGcguGCUGCACAc- -3'
miRNA:   3'- uCGAGCU----CGCG---------------UGACu--UGAUGUGUug -5'
28148 3' -51.3 NC_005887.1 + 31289 0.66 0.832393
Target:  5'- uGUUCGAucGCGUcguGCUGAAgcACGCGGCg -3'
miRNA:   3'- uCGAGCU--CGCG---UGACUUgaUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 30707 0.66 0.839921
Target:  5'- cGCUCGAGCGuCGCaucaacgauccgGAucugccggacgcGCUGCGCGAg -3'
miRNA:   3'- uCGAGCUCGC-GUGa-----------CU------------UGAUGUGUUg -5'
28148 3' -51.3 NC_005887.1 + 40631 0.8 0.161262
Target:  5'- uGCUCGAGCGCGCcgaGAACUcguGCGCGAg -3'
miRNA:   3'- uCGAGCUCGCGUGa--CUUGA---UGUGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.