miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28148 3' -51.3 NC_005887.1 + 15950 0.79 0.186262
Target:  5'- cGCgUCGAGCGCACcGAGCUGCugGuGCg -3'
miRNA:   3'- uCG-AGCUCGCGUGaCUUGAUGugU-UG- -5'
28148 3' -51.3 NC_005887.1 + 27416 0.69 0.635232
Target:  5'- cGCUCGucuGCGCGCc--GCUGCGCGugGCg -3'
miRNA:   3'- uCGAGCu--CGCGUGacuUGAUGUGU--UG- -5'
28148 3' -51.3 NC_005887.1 + 9787 0.67 0.771512
Target:  5'- cAGCUgcCGGGCGUugaGCU--GCUGCACGAUc -3'
miRNA:   3'- -UCGA--GCUCGCG---UGAcuUGAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 495 0.72 0.48696
Target:  5'- gGGUUCGAGCGCAgcaacagcGGGCgGCGCGGCg -3'
miRNA:   3'- -UCGAGCUCGCGUga------CUUGaUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 40631 0.8 0.161262
Target:  5'- uGCUCGAGCGCGCcgaGAACUcguGCGCGAg -3'
miRNA:   3'- uCGAGCUCGCGUGa--CUUGA---UGUGUUg -5'
28148 3' -51.3 NC_005887.1 + 12796 0.76 0.274945
Target:  5'- cGGCgcgaUCGAGCGCAuuCUGcuGCUGCGCGACc -3'
miRNA:   3'- -UCG----AGCUCGCGU--GACu-UGAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 32667 0.67 0.786343
Target:  5'- aAGCUCGugugcgggcugcacGUGCACUGGAacaUGCGCGucACg -3'
miRNA:   3'- -UCGAGCu-------------CGCGUGACUUg--AUGUGU--UG- -5'
28148 3' -51.3 NC_005887.1 + 23475 0.67 0.792593
Target:  5'- gAGCugaUCGAcGCGCuGCUGcGGCUGC-CAGCg -3'
miRNA:   3'- -UCG---AGCU-CGCG-UGAC-UUGAUGuGUUG- -5'
28148 3' -51.3 NC_005887.1 + 1307 0.71 0.554022
Target:  5'- cGUUUucGCGUGCUGAGCgccGCGCAGCg -3'
miRNA:   3'- uCGAGcuCGCGUGACUUGa--UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 17607 0.7 0.565491
Target:  5'- cGCUCGcGCGCAagaUGGaaacGCUgcGCACGACg -3'
miRNA:   3'- uCGAGCuCGCGUg--ACU----UGA--UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 13373 0.66 0.832393
Target:  5'- cGGCgauggCGcuCGCGCUGAagGCcgGCGCGGCg -3'
miRNA:   3'- -UCGa----GCucGCGUGACU--UGa-UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 13091 0.69 0.658573
Target:  5'- cGCUCGAuCGCGgaGuGCUGCAgGGCg -3'
miRNA:   3'- uCGAGCUcGCGUgaCuUGAUGUgUUG- -5'
28148 3' -51.3 NC_005887.1 + 11548 0.69 0.64691
Target:  5'- cAGCUCG-GCGCGC--AGC-GCGCGGCg -3'
miRNA:   3'- -UCGAGCuCGCGUGacUUGaUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 28538 0.69 0.635232
Target:  5'- cGCUCacGCGCGCcGGGCUGCugAAUu -3'
miRNA:   3'- uCGAGcuCGCGUGaCUUGAUGugUUG- -5'
28148 3' -51.3 NC_005887.1 + 35656 0.67 0.78214
Target:  5'- gAGCUCGA-CGCugUcGAC-AUACAGCa -3'
miRNA:   3'- -UCGAGCUcGCGugAcUUGaUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 1360 0.67 0.792593
Target:  5'- cGCUCGAGCGCuacaucCUGucCcGCGCGucGCg -3'
miRNA:   3'- uCGAGCUCGCGu-----GACuuGaUGUGU--UG- -5'
28148 3' -51.3 NC_005887.1 + 14696 0.66 0.802857
Target:  5'- gGGCUCGucgcGGCGgGC-GGGCcggGCGCGGCg -3'
miRNA:   3'- -UCGAGC----UCGCgUGaCUUGa--UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 40558 0.66 0.821795
Target:  5'- cGCUCGcgcacgaguucucGGCGCGCUcGAGCaagUACAACc -3'
miRNA:   3'- uCGAGC-------------UCGCGUGA-CUUGau-GUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 17172 0.66 0.822769
Target:  5'- aGGCguggGAGCGCGC-GAACgcggccgcACGCGGCa -3'
miRNA:   3'- -UCGag--CUCGCGUGaCUUGa-------UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 12886 0.66 0.832393
Target:  5'- uGC-CGuGCGCgaGCUGAucgGCACGGCg -3'
miRNA:   3'- uCGaGCuCGCG--UGACUugaUGUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.