Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28148 | 3' | -51.3 | NC_005887.1 | + | 16064 | 0.67 | 0.771512 |
Target: 5'- cGGCUCGcGGCGgGuCUGcGCgcGCACGACa -3' miRNA: 3'- -UCGAGC-UCGCgU-GACuUGa-UGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 9787 | 0.67 | 0.771512 |
Target: 5'- cAGCUgcCGGGCGUugaGCU--GCUGCACGAUc -3' miRNA: 3'- -UCGA--GCUCGCG---UGAcuUGAUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 17311 | 0.67 | 0.771512 |
Target: 5'- cGGUUCG-GCGCACcGcguGCUGCACuuccGCg -3' miRNA: 3'- -UCGAGCuCGCGUGaCu--UGAUGUGu---UG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 7477 | 0.67 | 0.77044 |
Target: 5'- cGCgaaCGAGCGCuaccugcGCuUGAACUACACccucGGCg -3' miRNA: 3'- uCGa--GCUCGCG-------UG-ACUUGAUGUG----UUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 29796 | 0.67 | 0.760722 |
Target: 5'- cAGCUCGGGCcaguaGCUGgaagucugcggGugUGCGCGGCg -3' miRNA: 3'- -UCGAGCUCGcg---UGAC-----------UugAUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 12402 | 0.67 | 0.749784 |
Target: 5'- uGGCcggCGAGCGacguacgcaguuCGCUGAGCUGCA--GCg -3' miRNA: 3'- -UCGa--GCUCGC------------GUGACUUGAUGUguUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 17550 | 0.67 | 0.749784 |
Target: 5'- cGgUCGGcGCGUACUgGAACUacgugaccgGCGCGACg -3' miRNA: 3'- uCgAGCU-CGCGUGA-CUUGA---------UGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 4017 | 0.68 | 0.737596 |
Target: 5'- cGUUCcGGCGCGCUGAAUUGggguggcCugAACg -3' miRNA: 3'- uCGAGcUCGCGUGACUUGAU-------GugUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 41925 | 0.68 | 0.716215 |
Target: 5'- uGCU-GAGCGgcucgcaGCUGAGCUGCcCGGCg -3' miRNA: 3'- uCGAgCUCGCg------UGACUUGAUGuGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 11690 | 0.68 | 0.716215 |
Target: 5'- gAGCUCGGcauuGCGCACgcu-CUGCACcuGCg -3' miRNA: 3'- -UCGAGCU----CGCGUGacuuGAUGUGu-UG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 15425 | 0.68 | 0.716215 |
Target: 5'- uGCUCGGGCGuCACgugGAACgugGC-CGAg -3' miRNA: 3'- uCGAGCUCGC-GUGa--CUUGa--UGuGUUg -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 27527 | 0.68 | 0.716215 |
Target: 5'- cAGCUCGAGauucCGCGCUcGAACguguggGC-CGGCa -3' miRNA: 3'- -UCGAGCUC----GCGUGA-CUUGa-----UGuGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 32734 | 0.68 | 0.689889 |
Target: 5'- uGC-CGaAGCGCGCacgcgcgacaccggUGAGCUGCACAc- -3' miRNA: 3'- uCGaGC-UCGCGUG--------------ACUUGAUGUGUug -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 15596 | 0.69 | 0.681803 |
Target: 5'- aAGCUgagaCGcAGCGCAC-GGGCgucGCGCAGCa -3' miRNA: 3'- -UCGA----GC-UCGCGUGaCUUGa--UGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 30418 | 0.69 | 0.670208 |
Target: 5'- gAGCUCGgcaucGGgGCAUUGAaaaccgGCUGCGCGGa -3' miRNA: 3'- -UCGAGC-----UCgCGUGACU------UGAUGUGUUg -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 4103 | 0.69 | 0.670208 |
Target: 5'- cGGCaUCGAGUucGCGCaGGAC-ACGCGGCa -3' miRNA: 3'- -UCG-AGCUCG--CGUGaCUUGaUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 13091 | 0.69 | 0.658573 |
Target: 5'- cGCUCGAuCGCGgaGuGCUGCAgGGCg -3' miRNA: 3'- uCGAGCUcGCGUgaCuUGAUGUgUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 11548 | 0.69 | 0.64691 |
Target: 5'- cAGCUCG-GCGCGC--AGC-GCGCGGCg -3' miRNA: 3'- -UCGAGCuCGCGUGacUUGaUGUGUUG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 27416 | 0.69 | 0.635232 |
Target: 5'- cGCUCGucuGCGCGCc--GCUGCGCGugGCg -3' miRNA: 3'- uCGAGCu--CGCGUGacuUGAUGUGU--UG- -5' |
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28148 | 3' | -51.3 | NC_005887.1 | + | 28538 | 0.69 | 0.635232 |
Target: 5'- cGCUCacGCGCGCcGGGCUGCugAAUu -3' miRNA: 3'- uCGAGcuCGCGUGaCUUGAUGugUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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