miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28149 3' -61.4 NC_005887.1 + 5481 0.66 0.336633
Target:  5'- cGCAgGCCgAUgGCGCagcacCGGCCGCAgcacCGg -3'
miRNA:   3'- -CGUgCGGgUGgCGCG-----GCUGGCGUa---GC- -5'
28149 3' -61.4 NC_005887.1 + 28651 0.67 0.328804
Target:  5'- ----aCCUACCuCGUCGACCGCGUCc -3'
miRNA:   3'- cgugcGGGUGGcGCGGCUGGCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 4279 0.67 0.328804
Target:  5'- aGCACGCCUuucucCUGCGCgCG-CUGCAgcacuUCGg -3'
miRNA:   3'- -CGUGCGGGu----GGCGCG-GCuGGCGU-----AGC- -5'
28149 3' -61.4 NC_005887.1 + 36379 0.67 0.328804
Target:  5'- ---aGUgCGCgGCGUCGACCGCcgCGc -3'
miRNA:   3'- cgugCGgGUGgCGCGGCUGGCGuaGC- -5'
28149 3' -61.4 NC_005887.1 + 10767 0.67 0.321111
Target:  5'- cGCGCgGUCCAUCGCGuUCGACgGCuuaCGg -3'
miRNA:   3'- -CGUG-CGGGUGGCGC-GGCUGgCGua-GC- -5'
28149 3' -61.4 NC_005887.1 + 26845 0.67 0.321111
Target:  5'- gGCGCGUCUGCCGguaGCCGuuGCCGC--CGg -3'
miRNA:   3'- -CGUGCGGGUGGCg--CGGC--UGGCGuaGC- -5'
28149 3' -61.4 NC_005887.1 + 28285 0.67 0.321111
Target:  5'- gGCACGCCgAgCGCGC--GCaGCGUCGu -3'
miRNA:   3'- -CGUGCGGgUgGCGCGgcUGgCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 32242 0.67 0.321111
Target:  5'- aCugGCUCAUCgcugaGCGCCGACCuGCAg-- -3'
miRNA:   3'- cGugCGGGUGG-----CGCGGCUGG-CGUagc -5'
28149 3' -61.4 NC_005887.1 + 1860 0.67 0.321111
Target:  5'- gGCACGUCCuucggguaGCgGCCGACgCGCAggUCGa -3'
miRNA:   3'- -CGUGCGGGugg-----CG-CGGCUG-GCGU--AGC- -5'
28149 3' -61.4 NC_005887.1 + 16985 0.67 0.321111
Target:  5'- uCGCGCCCGUCGUcuuGCCGAuCUGC-UCGg -3'
miRNA:   3'- cGUGCGGGUGGCG---CGGCU-GGCGuAGC- -5'
28149 3' -61.4 NC_005887.1 + 11677 0.67 0.320349
Target:  5'- cGCACGCUCugCaccugcgugucgaGCGCCGAuCCGguguUCGg -3'
miRNA:   3'- -CGUGCGGGugG-------------CGCGGCU-GGCgu--AGC- -5'
28149 3' -61.4 NC_005887.1 + 15668 0.67 0.318829
Target:  5'- uGCGCGCCgagcucgaccagcuCACCGcCGCgCGGCCGgAUg- -3'
miRNA:   3'- -CGUGCGG--------------GUGGC-GCG-GCUGGCgUAgc -5'
28149 3' -61.4 NC_005887.1 + 16512 0.67 0.313553
Target:  5'- cGCAUGCCCG-CGCGCacgcgguucuCGAUCcCGUCGa -3'
miRNA:   3'- -CGUGCGGGUgGCGCG----------GCUGGcGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 17067 0.67 0.313553
Target:  5'- cGgACGCCgucauGCCGCuGCuCGACCGC-UCGc -3'
miRNA:   3'- -CgUGCGGg----UGGCG-CG-GCUGGCGuAGC- -5'
28149 3' -61.4 NC_005887.1 + 4684 0.67 0.30613
Target:  5'- -gGCGgCCACCgGCGCCGcgGCgaGCAUCu -3'
miRNA:   3'- cgUGCgGGUGG-CGCGGC--UGg-CGUAGc -5'
28149 3' -61.4 NC_005887.1 + 28196 0.67 0.30613
Target:  5'- uGUGCGCCgCAUCaGCGCCG--CGCGUCu -3'
miRNA:   3'- -CGUGCGG-GUGG-CGCGGCugGCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 40763 0.67 0.30613
Target:  5'- cGUugGCgCGCCGCGC--GCCGCcgagccggcgGUCGa -3'
miRNA:   3'- -CGugCGgGUGGCGCGgcUGGCG----------UAGC- -5'
28149 3' -61.4 NC_005887.1 + 5014 0.67 0.298843
Target:  5'- uCACGCCCGCCgagGCGCaGACCGa---- -3'
miRNA:   3'- cGUGCGGGUGG---CGCGgCUGGCguagc -5'
28149 3' -61.4 NC_005887.1 + 12935 0.67 0.298843
Target:  5'- aGCGCGUCCcuGCCGCaGCaaGCCGCGaCGc -3'
miRNA:   3'- -CGUGCGGG--UGGCG-CGgcUGGCGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 17663 0.67 0.298843
Target:  5'- gGCACGaucCUCGCCGCGCUuGgCGaCGUCGg -3'
miRNA:   3'- -CGUGC---GGGUGGCGCGGcUgGC-GUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.