miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28149 3' -61.4 NC_005887.1 + 27655 0.66 0.360928
Target:  5'- uGCGCGCugagCUGCCGCGCgcgcggcuugauCGuCUGCAUCa -3'
miRNA:   3'- -CGUGCG----GGUGGCGCG------------GCuGGCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 39519 0.66 0.358444
Target:  5'- uCACGCCgCACCaacugGCGCCGGcucuguaccccaauCCGCG-CGa -3'
miRNA:   3'- cGUGCGG-GUGG-----CGCGGCU--------------GGCGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 13883 0.66 0.352696
Target:  5'- uCGCGagCUACCG-GCuCGugCGCGUCGg -3'
miRNA:   3'- cGUGCg-GGUGGCgCG-GCugGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 13614 0.66 0.352696
Target:  5'- uGCugGCagCGCgGCGCgcggCGGCCGCAcUCa -3'
miRNA:   3'- -CGugCGg-GUGgCGCG----GCUGGCGU-AGc -5'
28149 3' -61.4 NC_005887.1 + 10212 0.66 0.352696
Target:  5'- uCGCGUCgAugcCCGCGCCGGacggCGCGUCu -3'
miRNA:   3'- cGUGCGGgU---GGCGCGGCUg---GCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 3776 0.66 0.352696
Target:  5'- aCugGCUCGacgaGgGCCgcGACCGCAUCGu -3'
miRNA:   3'- cGugCGGGUgg--CgCGG--CUGGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 13196 0.66 0.352696
Target:  5'- aGCAgG-CCGCCG-GCCGACgUGUGUCGc -3'
miRNA:   3'- -CGUgCgGGUGGCgCGGCUG-GCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 33930 0.66 0.352696
Target:  5'- uCGCGUCgACC-UGCCGACgGCGcUCGg -3'
miRNA:   3'- cGUGCGGgUGGcGCGGCUGgCGU-AGC- -5'
28149 3' -61.4 NC_005887.1 + 17589 0.66 0.352696
Target:  5'- aCACGCCCGucaaucCCGCGCUcGCgCGCAa-- -3'
miRNA:   3'- cGUGCGGGU------GGCGCGGcUG-GCGUagc -5'
28149 3' -61.4 NC_005887.1 + 3795 0.66 0.352696
Target:  5'- gGC-CGUCCAgcUUGCGCgGAUCGCgGUCGg -3'
miRNA:   3'- -CGuGCGGGU--GGCGCGgCUGGCG-UAGC- -5'
28149 3' -61.4 NC_005887.1 + 8514 0.66 0.352696
Target:  5'- cGgGCGCUCgAUCGCGuuGACgCGgAUCGc -3'
miRNA:   3'- -CgUGCGGG-UGGCGCggCUG-GCgUAGC- -5'
28149 3' -61.4 NC_005887.1 + 16817 0.66 0.352696
Target:  5'- uCGCGCCCAUCGU-CUG-CCGCAUg- -3'
miRNA:   3'- cGUGCGGGUGGCGcGGCuGGCGUAgc -5'
28149 3' -61.4 NC_005887.1 + 14450 0.66 0.344597
Target:  5'- cGUACGCgCG-CGCGCCGAgCgGCGacUCGa -3'
miRNA:   3'- -CGUGCGgGUgGCGCGGCU-GgCGU--AGC- -5'
28149 3' -61.4 NC_005887.1 + 41794 0.66 0.344597
Target:  5'- cGCGCGCCgggAUCGgauCGCCGcCCGuCAUCGc -3'
miRNA:   3'- -CGUGCGGg--UGGC---GCGGCuGGC-GUAGC- -5'
28149 3' -61.4 NC_005887.1 + 9843 0.66 0.344597
Target:  5'- aGCGCGgCCaaccugaacGCCGCGC--GCCGCAcaUCGu -3'
miRNA:   3'- -CGUGCgGG---------UGGCGCGgcUGGCGU--AGC- -5'
28149 3' -61.4 NC_005887.1 + 8116 0.66 0.344597
Target:  5'- cGCACGCagACaCGCGUCGAgCaCGUCGu -3'
miRNA:   3'- -CGUGCGggUG-GCGCGGCUgGcGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 27334 0.66 0.336633
Target:  5'- cCACGUCgACUGCGCC-ACgCGCAgCGg -3'
miRNA:   3'- cGUGCGGgUGGCGCGGcUG-GCGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 5467 0.66 0.336633
Target:  5'- gGCGcCGCCCGCCgguucaccggucGCGCUGGCuuCGCcuUCGa -3'
miRNA:   3'- -CGU-GCGGGUGG------------CGCGGCUG--GCGu-AGC- -5'
28149 3' -61.4 NC_005887.1 + 9460 0.66 0.336633
Target:  5'- uGCugGuauuCCCAuuCCGCGCCGAucgacCCGUAUUc -3'
miRNA:   3'- -CGugC----GGGU--GGCGCGGCU-----GGCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 5481 0.66 0.336633
Target:  5'- cGCAgGCCgAUgGCGCagcacCGGCCGCAgcacCGg -3'
miRNA:   3'- -CGUgCGGgUGgCGCG-----GCUGGCGUa---GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.