miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28149 3' -61.4 NC_005887.1 + 4684 0.67 0.30613
Target:  5'- -gGCGgCCACCgGCGCCGcgGCgaGCAUCu -3'
miRNA:   3'- cgUGCgGGUGG-CGCGGC--UGg-CGUAGc -5'
28149 3' -61.4 NC_005887.1 + 4751 0.69 0.239257
Target:  5'- gGCGCGCCCAUCagacccuCGCCGuCUGCGcagCGg -3'
miRNA:   3'- -CGUGCGGGUGGc------GCGGCuGGCGUa--GC- -5'
28149 3' -61.4 NC_005887.1 + 4970 0.68 0.284673
Target:  5'- cGCACGaaCACCucGCGCCGGCC-C-UCGg -3'
miRNA:   3'- -CGUGCggGUGG--CGCGGCUGGcGuAGC- -5'
28149 3' -61.4 NC_005887.1 + 5014 0.67 0.298843
Target:  5'- uCACGCCCGCCgagGCGCaGACCGa---- -3'
miRNA:   3'- cGUGCGGGUGG---CGCGgCUGGCguagc -5'
28149 3' -61.4 NC_005887.1 + 5049 0.69 0.227442
Target:  5'- gGCACGgCaaugGCCGCGCCGGaagaucagcCCGCAUa- -3'
miRNA:   3'- -CGUGCgGg---UGGCGCGGCU---------GGCGUAgc -5'
28149 3' -61.4 NC_005887.1 + 5144 0.69 0.233287
Target:  5'- cGCGCuGCCCGacgucggCGCGCCGcugaugcugaugGCaCGCGUCGa -3'
miRNA:   3'- -CGUG-CGGGUg------GCGCGGC------------UG-GCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 5435 0.71 0.180257
Target:  5'- gGCGCGaCCaCGCCGC-CCGcuggcacuccuGCCGCAUCc -3'
miRNA:   3'- -CGUGC-GG-GUGGCGcGGC-----------UGGCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 5467 0.66 0.336633
Target:  5'- gGCGcCGCCCGCCgguucaccggucGCGCUGGCuuCGCcuUCGa -3'
miRNA:   3'- -CGU-GCGGGUGG------------CGCGGCUG--GCGu-AGC- -5'
28149 3' -61.4 NC_005887.1 + 5481 0.66 0.336633
Target:  5'- cGCAgGCCgAUgGCGCagcacCGGCCGCAgcacCGg -3'
miRNA:   3'- -CGUgCGGgUGgCGCG-----GCUGGCGUa---GC- -5'
28149 3' -61.4 NC_005887.1 + 5690 0.75 0.082144
Target:  5'- cGUAuCGCCuuCACCGCGUCGcCCGCAUCc -3'
miRNA:   3'- -CGU-GCGG--GUGGCGCGGCuGGCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 5895 0.7 0.205294
Target:  5'- cGCuuCGCCCuucgcgacCCGCGCCGACuCG-AUCGc -3'
miRNA:   3'- -CGu-GCGGGu-------GGCGCGGCUG-GCgUAGC- -5'
28149 3' -61.4 NC_005887.1 + 6934 0.7 0.205294
Target:  5'- -aGCGCCUG-CGCGuuGGCCGaCGUCGc -3'
miRNA:   3'- cgUGCGGGUgGCGCggCUGGC-GUAGC- -5'
28149 3' -61.4 NC_005887.1 + 7222 0.7 0.185038
Target:  5'- -gGCGCUguCgGCGUCGGgCGCAUCGa -3'
miRNA:   3'- cgUGCGGguGgCGCGGCUgGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 7419 0.68 0.273723
Target:  5'- uCGCaCCCGCCGcCGCCucguuuggcgcuggcGugCGCGUCGu -3'
miRNA:   3'- cGUGcGGGUGGC-GCGG---------------CugGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 8101 0.73 0.110935
Target:  5'- cGCGCaGCUCGCCGCGCuCGccgaggcGCCGCuguUCGg -3'
miRNA:   3'- -CGUG-CGGGUGGCGCG-GC-------UGGCGu--AGC- -5'
28149 3' -61.4 NC_005887.1 + 8116 0.66 0.344597
Target:  5'- cGCACGCagACaCGCGUCGAgCaCGUCGu -3'
miRNA:   3'- -CGUGCGggUG-GCGCGGCUgGcGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 8210 0.67 0.291691
Target:  5'- cCGCGCaCCGacaCGCGCgGGCUguucaGCAUCGa -3'
miRNA:   3'- cGUGCG-GGUg--GCGCGgCUGG-----CGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 8373 0.7 0.185038
Target:  5'- aGCGCGUCCAUCGCGUucggaucggUGACgCGCuUCGc -3'
miRNA:   3'- -CGUGCGGGUGGCGCG---------GCUG-GCGuAGC- -5'
28149 3' -61.4 NC_005887.1 + 8514 0.66 0.352696
Target:  5'- cGgGCGCUCgAUCGCGuuGACgCGgAUCGc -3'
miRNA:   3'- -CgUGCGGG-UGGCGCggCUG-GCgUAGC- -5'
28149 3' -61.4 NC_005887.1 + 8771 0.69 0.245354
Target:  5'- uGC-CGUUCAUCGuCGCgGACgGCAUCGc -3'
miRNA:   3'- -CGuGCGGGUGGC-GCGgCUGgCGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.