miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28149 3' -61.4 NC_005887.1 + 405 0.7 0.185038
Target:  5'- -aGCGCCgcgaagacgCGCCGCGCCGcCCGCuGUUGc -3'
miRNA:   3'- cgUGCGG---------GUGGCGCGGCuGGCG-UAGC- -5'
28149 3' -61.4 NC_005887.1 + 534 0.69 0.221722
Target:  5'- cGCGuCGgCCGCCGCGC--GCCGCGcCGg -3'
miRNA:   3'- -CGU-GCgGGUGGCGCGgcUGGCGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 704 0.68 0.264422
Target:  5'- cGUGCGCUCGCCGCGCgCuuucAUCGCGgcuUCGa -3'
miRNA:   3'- -CGUGCGGGUGGCGCG-Gc---UGGCGU---AGC- -5'
28149 3' -61.4 NC_005887.1 + 1063 0.7 0.200056
Target:  5'- aGCGCGCgCACgGCgGCCGGCaauuugcgCGUGUCGg -3'
miRNA:   3'- -CGUGCGgGUGgCG-CGGCUG--------GCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 1560 0.72 0.149766
Target:  5'- cGCACgGCCgCGCCGCGCgaGcGCCGCAcgccgUCGg -3'
miRNA:   3'- -CGUG-CGG-GUGGCGCGg-C-UGGCGU-----AGC- -5'
28149 3' -61.4 NC_005887.1 + 1777 0.69 0.245354
Target:  5'- aCAUGCucgaCCugCGCGUCGGCCGCuaccCGa -3'
miRNA:   3'- cGUGCG----GGugGCGCGGCUGGCGua--GC- -5'
28149 3' -61.4 NC_005887.1 + 1860 0.67 0.321111
Target:  5'- gGCACGUCCuucggguaGCgGCCGACgCGCAggUCGa -3'
miRNA:   3'- -CGUGCGGGugg-----CG-CGGCUG-GCGU--AGC- -5'
28149 3' -61.4 NC_005887.1 + 2009 0.68 0.271039
Target:  5'- uCACGaCCCACCGauCGCCGuCaCGCAUg- -3'
miRNA:   3'- cGUGC-GGGUGGC--GCGGCuG-GCGUAgc -5'
28149 3' -61.4 NC_005887.1 + 2067 0.67 0.298843
Target:  5'- uGCAUGCCgCGCuCGUaguaGCCGGCCgGCAgguugUCGa -3'
miRNA:   3'- -CGUGCGG-GUG-GCG----CGGCUGG-CGU-----AGC- -5'
28149 3' -61.4 NC_005887.1 + 2313 0.69 0.223425
Target:  5'- cGCGCGCCCAugcucgUCGCGacgacuuCCGACCGgaugcgccagccgccCAUCGg -3'
miRNA:   3'- -CGUGCGGGU------GGCGC-------GGCUGGC---------------GUAGC- -5'
28149 3' -61.4 NC_005887.1 + 2710 0.68 0.284673
Target:  5'- cCGCGCCCACCaGCagguaCUGACuCGCcUCGg -3'
miRNA:   3'- cGUGCGGGUGG-CGc----GGCUG-GCGuAGC- -5'
28149 3' -61.4 NC_005887.1 + 2931 0.66 0.37779
Target:  5'- uGCGCGUuauCCACCGC-CUG-CgGCAUUGg -3'
miRNA:   3'- -CGUGCG---GGUGGCGcGGCuGgCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 3082 0.78 0.052465
Target:  5'- gGCuuUGCCCGCgGCGCUGGCCGCAggcgCGu -3'
miRNA:   3'- -CGu-GCGGGUGgCGCGGCUGGCGUa---GC- -5'
28149 3' -61.4 NC_005887.1 + 3391 0.69 0.216125
Target:  5'- cGCACGCUguuCGCCGCGCgCuACCGCuggCa -3'
miRNA:   3'- -CGUGCGG---GUGGCGCG-GcUGGCGua-Gc -5'
28149 3' -61.4 NC_005887.1 + 3705 0.74 0.099684
Target:  5'- cCACGCCgucgaGCCgcGCGCCGACCGCgAUCc -3'
miRNA:   3'- cGUGCGGg----UGG--CGCGGCUGGCG-UAGc -5'
28149 3' -61.4 NC_005887.1 + 3776 0.66 0.352696
Target:  5'- aCugGCUCGacgaGgGCCgcGACCGCAUCGu -3'
miRNA:   3'- cGugCGGGUgg--CgCGG--CUGGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 3795 0.66 0.352696
Target:  5'- gGC-CGUCCAgcUUGCGCgGAUCGCgGUCGg -3'
miRNA:   3'- -CGuGCGGGU--GGCGCGgCUGGCG-UAGC- -5'
28149 3' -61.4 NC_005887.1 + 4279 0.67 0.328804
Target:  5'- aGCACGCCUuucucCUGCGCgCG-CUGCAgcacuUCGg -3'
miRNA:   3'- -CGUGCGGGu----GGCGCG-GCuGGCGU-----AGC- -5'
28149 3' -61.4 NC_005887.1 + 4477 0.69 0.233287
Target:  5'- uGCAggauCGCCgCGCCuuCGCCGGCgCGCAUUGc -3'
miRNA:   3'- -CGU----GCGG-GUGGc-GCGGCUG-GCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 4508 0.67 0.298843
Target:  5'- cGCGCGUCUGCU-CGCCGACUacggcgGCGUCc -3'
miRNA:   3'- -CGUGCGGGUGGcGCGGCUGG------CGUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.