miRNA display CGI


Results 1 - 20 of 211 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28149 3' -61.4 NC_005887.1 + 13196 0.66 0.352696
Target:  5'- aGCAgG-CCGCCG-GCCGACgUGUGUCGc -3'
miRNA:   3'- -CGUgCgGGUGGCgCGGCUG-GCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 13883 0.66 0.352696
Target:  5'- uCGCGagCUACCG-GCuCGugCGCGUCGg -3'
miRNA:   3'- cGUGCg-GGUGGCgCG-GCugGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 40654 0.66 0.37779
Target:  5'- -aGCGCgCGCCGaucaCCGGCCGCAcCa -3'
miRNA:   3'- cgUGCGgGUGGCgc--GGCUGGCGUaGc -5'
28149 3' -61.4 NC_005887.1 + 11784 0.66 0.360928
Target:  5'- -gGCGUCC-UCGCuGCuCGGCgGCGUCGg -3'
miRNA:   3'- cgUGCGGGuGGCG-CG-GCUGgCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 40430 0.66 0.37779
Target:  5'- cGCGCGCgacggcggcaCgGCCGCGCuCGACgGCcaGUCc -3'
miRNA:   3'- -CGUGCG----------GgUGGCGCG-GCUGgCG--UAGc -5'
28149 3' -61.4 NC_005887.1 + 3776 0.66 0.352696
Target:  5'- aCugGCUCGacgaGgGCCgcGACCGCAUCGu -3'
miRNA:   3'- cGugCGGGUgg--CgCGG--CUGGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 33930 0.66 0.352696
Target:  5'- uCGCGUCgACC-UGCCGACgGCGcUCGg -3'
miRNA:   3'- cGUGCGGgUGGcGCGGCUGgCGU-AGC- -5'
28149 3' -61.4 NC_005887.1 + 39519 0.66 0.358444
Target:  5'- uCACGCCgCACCaacugGCGCCGGcucuguaccccaauCCGCG-CGa -3'
miRNA:   3'- cGUGCGG-GUGG-----CGCGGCU--------------GGCGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 27655 0.66 0.360928
Target:  5'- uGCGCGCugagCUGCCGCGCgcgcggcuugauCGuCUGCAUCa -3'
miRNA:   3'- -CGUGCG----GGUGGCGCG------------GCuGGCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 5481 0.66 0.336633
Target:  5'- cGCAgGCCgAUgGCGCagcacCGGCCGCAgcacCGg -3'
miRNA:   3'- -CGUgCGGgUGgCGCG-----GCUGGCGUa---GC- -5'
28149 3' -61.4 NC_005887.1 + 31781 0.66 0.376935
Target:  5'- --uCGCCCACCcuGCgagccaguggucuGCCG-CCGCAUCc -3'
miRNA:   3'- cguGCGGGUGG--CG-------------CGGCuGGCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 35330 0.66 0.360928
Target:  5'- uGC-CGCgCGCCGCGgCGGCCGg---- -3'
miRNA:   3'- -CGuGCGgGUGGCGCgGCUGGCguagc -5'
28149 3' -61.4 NC_005887.1 + 13614 0.66 0.352696
Target:  5'- uGCugGCagCGCgGCGCgcggCGGCCGCAcUCa -3'
miRNA:   3'- -CGugCGg-GUGgCGCG----GCUGGCGU-AGc -5'
28149 3' -61.4 NC_005887.1 + 9843 0.66 0.344597
Target:  5'- aGCGCGgCCaaccugaacGCCGCGC--GCCGCAcaUCGu -3'
miRNA:   3'- -CGUGCgGG---------UGGCGCGgcUGGCGU--AGC- -5'
28149 3' -61.4 NC_005887.1 + 34516 0.66 0.360928
Target:  5'- uGCACGCCCAUCa----GGCCGCAgCGg -3'
miRNA:   3'- -CGUGCGGGUGGcgcggCUGGCGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 27334 0.66 0.336633
Target:  5'- cCACGUCgACUGCGCC-ACgCGCAgCGg -3'
miRNA:   3'- cGUGCGGgUGGCGCGGcUG-GCGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 17589 0.66 0.352696
Target:  5'- aCACGCCCGucaaucCCGCGCUcGCgCGCAa-- -3'
miRNA:   3'- cGUGCGGGU------GGCGCGGcUG-GCGUagc -5'
28149 3' -61.4 NC_005887.1 + 23283 0.66 0.369293
Target:  5'- cGguUGCCgCAgcCCGCGCCGaagaacaacGCCGCAcugCGg -3'
miRNA:   3'- -CguGCGG-GU--GGCGCGGC---------UGGCGUa--GC- -5'
28149 3' -61.4 NC_005887.1 + 12198 0.66 0.37779
Target:  5'- cCGCGaaggacagCGCCGCGCCGGgCGCGcCGg -3'
miRNA:   3'- cGUGCgg------GUGGCGCGGCUgGCGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 10212 0.66 0.352696
Target:  5'- uCGCGUCgAugcCCGCGCCGGacggCGCGUCu -3'
miRNA:   3'- cGUGCGGgU---GGCGCGGCUg---GCGUAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.