miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28149 3' -61.4 NC_005887.1 + 39918 0.71 0.171023
Target:  5'- uGCGCGCagAUCGaGCCGGgCGCGUCGa -3'
miRNA:   3'- -CGUGCGggUGGCgCGGCUgGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 24952 0.73 0.124038
Target:  5'- uGCGCGCgggCCGCCuuGCGCgCGGCCGCGagGg -3'
miRNA:   3'- -CGUGCG---GGUGG--CGCG-GCUGGCGUagC- -5'
28149 3' -61.4 NC_005887.1 + 31326 0.72 0.138192
Target:  5'- uCACGuCCCA-CGUGCCGACCGggcCGUCGu -3'
miRNA:   3'- cGUGC-GGGUgGCGCGGCUGGC---GUAGC- -5'
28149 3' -61.4 NC_005887.1 + 27981 0.72 0.145813
Target:  5'- cGC-CGCCgGCuCGgGCCGAaUCGCGUCGu -3'
miRNA:   3'- -CGuGCGGgUG-GCgCGGCU-GGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 32756 0.72 0.149366
Target:  5'- uGCGCGCCgGCgCGCGCCaugcagccggcucGugCGCAggaUCGg -3'
miRNA:   3'- -CGUGCGGgUG-GCGCGG-------------CugGCGU---AGC- -5'
28149 3' -61.4 NC_005887.1 + 31266 0.71 0.157964
Target:  5'- aGUAcuCGUCgGCCGCGUCGAUCGCcUCGu -3'
miRNA:   3'- -CGU--GCGGgUGGCGCGGCUGGCGuAGC- -5'
28149 3' -61.4 NC_005887.1 + 14984 0.71 0.157964
Target:  5'- cCGCGCagGCCGCGCaGGCCGCAggCGu -3'
miRNA:   3'- cGUGCGggUGGCGCGgCUGGCGUa-GC- -5'
28149 3' -61.4 NC_005887.1 + 15550 0.71 0.162214
Target:  5'- gGCgACGaCUCGgCGCGCgCGACCGCGcUCGa -3'
miRNA:   3'- -CG-UGC-GGGUgGCGCG-GCUGGCGU-AGC- -5'
28149 3' -61.4 NC_005887.1 + 31667 0.71 0.171023
Target:  5'- uCGCGCCagaagccguuaGCCGgGCCGGCUGguUCGu -3'
miRNA:   3'- cGUGCGGg----------UGGCgCGGCUGGCguAGC- -5'
28149 3' -61.4 NC_005887.1 + 28574 0.73 0.120716
Target:  5'- nGC-CGCCCGCUGCGCgGA-CGCgGUCGa -3'
miRNA:   3'- -CGuGCGGGUGGCGCGgCUgGCG-UAGC- -5'
28149 3' -61.4 NC_005887.1 + 15999 0.73 0.120716
Target:  5'- cGCGCGCagacCCGCCGCgaGCCGGugaCGUAUCGg -3'
miRNA:   3'- -CGUGCG----GGUGGCG--CGGCUg--GCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 40925 0.73 0.111239
Target:  5'- cGCGCGCgCACCGaguucggcaaCGCCGAgCGCAugcUCGa -3'
miRNA:   3'- -CGUGCGgGUGGC----------GCGGCUgGCGU---AGC- -5'
28149 3' -61.4 NC_005887.1 + 28534 0.76 0.074935
Target:  5'- gGCACGCUCACgCGCGCCGGgCugcugaauuuguagGCGUCGc -3'
miRNA:   3'- -CGUGCGGGUG-GCGCGGCUgG--------------CGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 40143 0.76 0.0777
Target:  5'- uGCGCGCUgcgCGCCGCGCUcGCCGCGUg- -3'
miRNA:   3'- -CGUGCGG---GUGGCGCGGcUGGCGUAgc -5'
28149 3' -61.4 NC_005887.1 + 28922 0.75 0.082144
Target:  5'- cGCGCGCCCAUUGCGUCGACgacaGCGa-- -3'
miRNA:   3'- -CGUGCGGGUGGCGCGGCUGg---CGUagc -5'
28149 3' -61.4 NC_005887.1 + 15372 0.75 0.086831
Target:  5'- -gACGCCCgagcaggucgacGCCGCGCUGAUCGCGcgCGg -3'
miRNA:   3'- cgUGCGGG------------UGGCGCGGCUGGCGUa-GC- -5'
28149 3' -61.4 NC_005887.1 + 36173 0.75 0.089268
Target:  5'- gGCGCG-UCACCGUGCCGACCGgGaUCa -3'
miRNA:   3'- -CGUGCgGGUGGCGCGGCUGGCgU-AGc -5'
28149 3' -61.4 NC_005887.1 + 23541 0.74 0.096977
Target:  5'- aGCugGCagcguaCGCUGaCGCCGcCCGCAUCGc -3'
miRNA:   3'- -CGugCGg-----GUGGC-GCGGCuGGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 3705 0.74 0.099684
Target:  5'- cCACGCCgucgaGCCgcGCGCCGACCGCgAUCc -3'
miRNA:   3'- cGUGCGGg----UGG--CGCGGCUGGCG-UAGc -5'
28149 3' -61.4 NC_005887.1 + 8101 0.73 0.110935
Target:  5'- cGCGCaGCUCGCCGCGCuCGccgaggcGCCGCuguUCGg -3'
miRNA:   3'- -CGUG-CGGGUGGCGCG-GC-------UGGCGu--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.