miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28149 3' -61.4 NC_005887.1 + 40430 0.66 0.37779
Target:  5'- cGCGCGCgacggcggcaCgGCCGCGCuCGACgGCcaGUCc -3'
miRNA:   3'- -CGUGCG----------GgUGGCGCG-GCUGgCG--UAGc -5'
28149 3' -61.4 NC_005887.1 + 8116 0.66 0.344597
Target:  5'- cGCACGCagACaCGCGUCGAgCaCGUCGu -3'
miRNA:   3'- -CGUGCGggUG-GCGCGGCUgGcGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 9460 0.66 0.336633
Target:  5'- uGCugGuauuCCCAuuCCGCGCCGAucgacCCGUAUUc -3'
miRNA:   3'- -CGugC----GGGU--GGCGCGGCU-----GGCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 13455 0.78 0.051004
Target:  5'- -gACGUCCGCCGCGCCGGCCuucaGCG-CGa -3'
miRNA:   3'- cgUGCGGGUGGCGCGGCUGG----CGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 34015 0.66 0.376935
Target:  5'- cGCACGCgacgugcUCGCCgaGCGCCGuCgGCAggUCGa -3'
miRNA:   3'- -CGUGCG-------GGUGG--CGCGGCuGgCGU--AGC- -5'
28149 3' -61.4 NC_005887.1 + 39984 0.66 0.376935
Target:  5'- aCGCGCCCGgcucgauCUGCGCgGcACCGUAUg- -3'
miRNA:   3'- cGUGCGGGU-------GGCGCGgC-UGGCGUAgc -5'
28149 3' -61.4 NC_005887.1 + 17116 0.66 0.369293
Target:  5'- gGCGucCGCCCAagCGUGCCGcugCGCAUCc -3'
miRNA:   3'- -CGU--GCGGGUg-GCGCGGCug-GCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 18684 0.66 0.360928
Target:  5'- gGC-CGCCgAUCGCGCUGccgagcaacgaACCGUaAUCGg -3'
miRNA:   3'- -CGuGCGGgUGGCGCGGC-----------UGGCG-UAGC- -5'
28149 3' -61.4 NC_005887.1 + 17702 0.66 0.360928
Target:  5'- uGCA-GCuUCACgGCGCUGACCGUcgUGc -3'
miRNA:   3'- -CGUgCG-GGUGgCGCGGCUGGCGuaGC- -5'
28149 3' -61.4 NC_005887.1 + 41794 0.66 0.344597
Target:  5'- cGCGCGCCgggAUCGgauCGCCGcCCGuCAUCGc -3'
miRNA:   3'- -CGUGCGGg--UGGC---GCGGCuGGC-GUAGC- -5'
28149 3' -61.4 NC_005887.1 + 3795 0.66 0.352696
Target:  5'- gGC-CGUCCAgcUUGCGCgGAUCGCgGUCGg -3'
miRNA:   3'- -CGuGCGGGU--GGCGCGgCUGGCG-UAGC- -5'
28149 3' -61.4 NC_005887.1 + 11722 0.66 0.360928
Target:  5'- aGCA-GCCCcugauACCGCGUCuGCaaCGCGUCGa -3'
miRNA:   3'- -CGUgCGGG-----UGGCGCGGcUG--GCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 41146 0.66 0.37779
Target:  5'- uGCcuCGUCCACgagCGCGCgGAUCGUGUCc -3'
miRNA:   3'- -CGu-GCGGGUG---GCGCGgCUGGCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 8514 0.66 0.352696
Target:  5'- cGgGCGCUCgAUCGCGuuGACgCGgAUCGc -3'
miRNA:   3'- -CgUGCGGG-UGGCGCggCUG-GCgUAGC- -5'
28149 3' -61.4 NC_005887.1 + 2931 0.66 0.37779
Target:  5'- uGCGCGUuauCCACCGC-CUG-CgGCAUUGg -3'
miRNA:   3'- -CGUGCG---GGUGGCGcGGCuGgCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 31383 0.66 0.360928
Target:  5'- gGCACGUgggacgugaCCACCgguGCGCCGauGCCG-GUCGa -3'
miRNA:   3'- -CGUGCG---------GGUGG---CGCGGC--UGGCgUAGC- -5'
28149 3' -61.4 NC_005887.1 + 16817 0.66 0.352696
Target:  5'- uCGCGCCCAUCGU-CUG-CCGCAUg- -3'
miRNA:   3'- cGUGCGGGUGGCGcGGCuGGCGUAgc -5'
28149 3' -61.4 NC_005887.1 + 14450 0.66 0.344597
Target:  5'- cGUACGCgCG-CGCGCCGAgCgGCGacUCGa -3'
miRNA:   3'- -CGUGCGgGUgGCGCGGCU-GgCGU--AGC- -5'
28149 3' -61.4 NC_005887.1 + 40091 0.66 0.37779
Target:  5'- gGC-CGCCUcgaGCCGCGCCaugaugcgcACCGCGaCGu -3'
miRNA:   3'- -CGuGCGGG---UGGCGCGGc--------UGGCGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 14946 0.66 0.369293
Target:  5'- aGCugGCgcauuCUGCCGCGCgGugCGCGc-- -3'
miRNA:   3'- -CGugCG-----GGUGGCGCGgCugGCGUagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.