miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28149 3' -61.4 NC_005887.1 + 21316 1.1 0.000168
Target:  5'- gGCACGCCCACCGCGCCGACCGCAUCGg -3'
miRNA:   3'- -CGUGCGGGUGGCGCGGCUGGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 13455 0.78 0.051004
Target:  5'- -gACGUCCGCCGCGCCGGCCuucaGCG-CGa -3'
miRNA:   3'- cgUGCGGGUGGCGCGGCUGG----CGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 12962 0.78 0.051004
Target:  5'- uGCugGCUCGCCGUGCCGAUCaGC-UCGc -3'
miRNA:   3'- -CGugCGGGUGGCGCGGCUGG-CGuAGC- -5'
28149 3' -61.4 NC_005887.1 + 3082 0.78 0.052465
Target:  5'- gGCuuUGCCCGCgGCGCUGGCCGCAggcgCGu -3'
miRNA:   3'- -CGu-GCGGGUGgCGCGGCUGGCGUa---GC- -5'
28149 3' -61.4 NC_005887.1 + 16594 0.78 0.05551
Target:  5'- aCGCGCCCACUcgGCGCCGGCgGCGaCGc -3'
miRNA:   3'- cGUGCGGGUGG--CGCGGCUGgCGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 33908 0.77 0.064611
Target:  5'- cGUACGCCCugcaugcguucgaucGCCGCGCCGAccugacacCCGCGUgGu -3'
miRNA:   3'- -CGUGCGGG---------------UGGCGCGGCU--------GGCGUAgC- -5'
28149 3' -61.4 NC_005887.1 + 14681 0.76 0.069492
Target:  5'- aGCGCGCCCucgACgGCGCCGACgGCcgUa -3'
miRNA:   3'- -CGUGCGGG---UGgCGCGGCUGgCGuaGc -5'
28149 3' -61.4 NC_005887.1 + 23319 0.76 0.069492
Target:  5'- aGCuGCGCCuuUugCGCGCCGACCGCcgCc -3'
miRNA:   3'- -CG-UGCGG--GugGCGCGGCUGGCGuaGc -5'
28149 3' -61.4 NC_005887.1 + 31451 0.76 0.073486
Target:  5'- gGCACGCaCCGCUa-GCCGAgCGCGUCGa -3'
miRNA:   3'- -CGUGCG-GGUGGcgCGGCUgGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 28534 0.76 0.074935
Target:  5'- gGCACGCUCACgCGCGCCGGgCugcugaauuuguagGCGUCGc -3'
miRNA:   3'- -CGUGCGGGUG-GCGCGGCUgG--------------CGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 28600 0.76 0.0777
Target:  5'- aGCA-GCCCGgCGCGCgugagcgugccUGACCGCAUCGu -3'
miRNA:   3'- -CGUgCGGGUgGCGCG-----------GCUGGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 40143 0.76 0.0777
Target:  5'- uGCGCGCUgcgCGCCGCGCUcGCCGCGUg- -3'
miRNA:   3'- -CGUGCGG---GUGGCGCGGcUGGCGUAgc -5'
28149 3' -61.4 NC_005887.1 + 5690 0.75 0.082144
Target:  5'- cGUAuCGCCuuCACCGCGUCGcCCGCAUCc -3'
miRNA:   3'- -CGU-GCGG--GUGGCGCGGCuGGCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 28922 0.75 0.082144
Target:  5'- cGCGCGCCCAUUGCGUCGACgacaGCGa-- -3'
miRNA:   3'- -CGUGCGGGUGGCGCGGCUGg---CGUagc -5'
28149 3' -61.4 NC_005887.1 + 14903 0.75 0.086831
Target:  5'- uGCACGCCCGCgaaCGUGCCcGCCaucaGCGUCGc -3'
miRNA:   3'- -CGUGCGGGUG---GCGCGGcUGG----CGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 15372 0.75 0.086831
Target:  5'- -gACGCCCgagcaggucgacGCCGCGCUGAUCGCGcgCGg -3'
miRNA:   3'- cgUGCGGG------------UGGCGCGGCUGGCGUa-GC- -5'
28149 3' -61.4 NC_005887.1 + 36173 0.75 0.089268
Target:  5'- gGCGCG-UCACCGUGCCGACCGgGaUCa -3'
miRNA:   3'- -CGUGCgGGUGGCGCGGCUGGCgU-AGc -5'
28149 3' -61.4 NC_005887.1 + 40464 0.74 0.09434
Target:  5'- gGCACGUCgGCCGUGCCGG--GCAUCa -3'
miRNA:   3'- -CGUGCGGgUGGCGCGGCUggCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 23541 0.74 0.096977
Target:  5'- aGCugGCagcguaCGCUGaCGCCGcCCGCAUCGc -3'
miRNA:   3'- -CGugCGg-----GUGGC-GCGGCuGGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 3705 0.74 0.099684
Target:  5'- cCACGCCgucgaGCCgcGCGCCGACCGCgAUCc -3'
miRNA:   3'- cGUGCGGg----UGG--CGCGGCUGGCG-UAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.