miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28149 3' -61.4 NC_005887.1 + 16301 0.74 0.102462
Target:  5'- cGUGCGCUCGCCG-GCCGG-CGUAUCGa -3'
miRNA:   3'- -CGUGCGGGUGGCgCGGCUgGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 29568 0.74 0.105024
Target:  5'- aCGCGCCCGCCGUcgaggccGCCGGCuaCGaCAUCGu -3'
miRNA:   3'- cGUGCGGGUGGCG-------CGGCUG--GC-GUAGC- -5'
28149 3' -61.4 NC_005887.1 + 8101 0.73 0.110935
Target:  5'- cGCGCaGCUCGCCGCGCuCGccgaggcGCCGCuguUCGg -3'
miRNA:   3'- -CGUG-CGGGUGGCGCG-GC-------UGGCGu--AGC- -5'
28149 3' -61.4 NC_005887.1 + 40925 0.73 0.111239
Target:  5'- cGCGCGCgCACCGaguucggcaaCGCCGAgCGCAugcUCGa -3'
miRNA:   3'- -CGUGCGgGUGGC----------GCGGCUgGCGU---AGC- -5'
28149 3' -61.4 NC_005887.1 + 9343 0.73 0.114318
Target:  5'- uGCG-GCgUCGCCGUGCCGACCGCcgUGc -3'
miRNA:   3'- -CGUgCG-GGUGGCGCGGCUGGCGuaGC- -5'
28149 3' -61.4 NC_005887.1 + 28574 0.73 0.120716
Target:  5'- nGC-CGCCCGCUGCGCgGA-CGCgGUCGa -3'
miRNA:   3'- -CGuGCGGGUGGCGCGgCUgGCG-UAGC- -5'
28149 3' -61.4 NC_005887.1 + 15999 0.73 0.120716
Target:  5'- cGCGCGCagacCCGCCGCgaGCCGGugaCGUAUCGg -3'
miRNA:   3'- -CGUGCG----GGUGGCG--CGGCUg--GCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 24952 0.73 0.124038
Target:  5'- uGCGCGCgggCCGCCuuGCGCgCGGCCGCGagGg -3'
miRNA:   3'- -CGUGCG---GGUGG--CGCG-GCUGGCGUagC- -5'
28149 3' -61.4 NC_005887.1 + 26074 0.72 0.134158
Target:  5'- aGCcuCGCCC-CCGaCGCCGcccgugaagcuguACCGCGUCGc -3'
miRNA:   3'- -CGu-GCGGGuGGC-GCGGC-------------UGGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 14759 0.72 0.134521
Target:  5'- gGCcCGCCCGCCGCGacgagcCCGAUCGUgcggggcagcGUCGa -3'
miRNA:   3'- -CGuGCGGGUGGCGC------GGCUGGCG----------UAGC- -5'
28149 3' -61.4 NC_005887.1 + 21877 0.72 0.134521
Target:  5'- gGCGCGCCCGgCaGCGCCG-CgGaCGUCGu -3'
miRNA:   3'- -CGUGCGGGUgG-CGCGGCuGgC-GUAGC- -5'
28149 3' -61.4 NC_005887.1 + 36578 0.72 0.134521
Target:  5'- cGC-CGCCCgauGCUGCgGUCGACCGCA-CGg -3'
miRNA:   3'- -CGuGCGGG---UGGCG-CGGCUGGCGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 35014 0.72 0.134521
Target:  5'- cGCACGCCCGCCGaguucgaaGCCGGCgacgGCAa-- -3'
miRNA:   3'- -CGUGCGGGUGGCg-------CGGCUGg---CGUagc -5'
28149 3' -61.4 NC_005887.1 + 31326 0.72 0.138192
Target:  5'- uCACGuCCCA-CGUGCCGACCGggcCGUCGu -3'
miRNA:   3'- cGUGC-GGGUgGCGCGGCUGGC---GUAGC- -5'
28149 3' -61.4 NC_005887.1 + 27981 0.72 0.145813
Target:  5'- cGC-CGCCgGCuCGgGCCGAaUCGCGUCGu -3'
miRNA:   3'- -CGuGCGGgUG-GCgCGGCU-GGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 26771 0.72 0.145813
Target:  5'- aGC-UGCCCgcgGCCGCGCgaCGGCUGUAUCGc -3'
miRNA:   3'- -CGuGCGGG---UGGCGCG--GCUGGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 13163 0.72 0.145813
Target:  5'- gGCACGCCCugcagcacuCCGCGaUCGAgCGCcgCGu -3'
miRNA:   3'- -CGUGCGGGu--------GGCGC-GGCUgGCGuaGC- -5'
28149 3' -61.4 NC_005887.1 + 32756 0.72 0.149366
Target:  5'- uGCGCGCCgGCgCGCGCCaugcagccggcucGugCGCAggaUCGg -3'
miRNA:   3'- -CGUGCGGgUG-GCGCGG-------------CugGCGU---AGC- -5'
28149 3' -61.4 NC_005887.1 + 11373 0.72 0.149766
Target:  5'- -gGCGCUCGCUGCcgaGCCGGCCGCugCGa -3'
miRNA:   3'- cgUGCGGGUGGCG---CGGCUGGCGuaGC- -5'
28149 3' -61.4 NC_005887.1 + 10980 0.72 0.149766
Target:  5'- aGCAgGCCgGCCgacgucaucuGCGCCGGCUGCAg-- -3'
miRNA:   3'- -CGUgCGGgUGG----------CGCGGCUGGCGUagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.