miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28149 3' -61.4 NC_005887.1 + 41794 0.66 0.344597
Target:  5'- cGCGCGCCgggAUCGgauCGCCGcCCGuCAUCGc -3'
miRNA:   3'- -CGUGCGGg--UGGC---GCGGCuGGC-GUAGC- -5'
28149 3' -61.4 NC_005887.1 + 41684 0.71 0.162214
Target:  5'- aGCAgauCCUcacggGCCGCGCCGGCCGCcgCa -3'
miRNA:   3'- -CGUgc-GGG-----UGGCGCGGCUGGCGuaGc -5'
28149 3' -61.4 NC_005887.1 + 41617 0.68 0.264422
Target:  5'- cGCugGCUgACuucgcgugCGCGCCGAgCGCcUCGc -3'
miRNA:   3'- -CGugCGGgUG--------GCGCGGCUgGCGuAGC- -5'
28149 3' -61.4 NC_005887.1 + 41294 0.69 0.216125
Target:  5'- gGCGCGCugcugCCGCCGgGCaaggaacACCGCAUCa -3'
miRNA:   3'- -CGUGCG-----GGUGGCgCGgc-----UGGCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 41146 0.66 0.37779
Target:  5'- uGCcuCGUCCACgagCGCGCgGAUCGUGUCc -3'
miRNA:   3'- -CGu-GCGGGUG---GCGCGgCUGGCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 40925 0.73 0.111239
Target:  5'- cGCGCGCgCACCGaguucggcaaCGCCGAgCGCAugcUCGa -3'
miRNA:   3'- -CGUGCGgGUGGC----------GCGGCUgGCGU---AGC- -5'
28149 3' -61.4 NC_005887.1 + 40763 0.67 0.30613
Target:  5'- cGUugGCgCGCCGCGC--GCCGCcgagccggcgGUCGa -3'
miRNA:   3'- -CGugCGgGUGGCGCGgcUGGCG----------UAGC- -5'
28149 3' -61.4 NC_005887.1 + 40654 0.66 0.37779
Target:  5'- -aGCGCgCGCCGaucaCCGGCCGCAcCa -3'
miRNA:   3'- cgUGCGgGUGGCgc--GGCUGGCGUaGc -5'
28149 3' -61.4 NC_005887.1 + 40625 0.71 0.175586
Target:  5'- aGCGCGCCgagaacucgugCGCgaGCGCCaGACCGuCGUCGc -3'
miRNA:   3'- -CGUGCGG-----------GUGg-CGCGG-CUGGC-GUAGC- -5'
28149 3' -61.4 NC_005887.1 + 40464 0.74 0.09434
Target:  5'- gGCACGUCgGCCGUGCCGG--GCAUCa -3'
miRNA:   3'- -CGUGCGGgUGGCGCGGCUggCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 40430 0.66 0.37779
Target:  5'- cGCGCGCgacggcggcaCgGCCGCGCuCGACgGCcaGUCc -3'
miRNA:   3'- -CGUGCG----------GgUGGCGCG-GCUGgCG--UAGc -5'
28149 3' -61.4 NC_005887.1 + 40224 0.68 0.277789
Target:  5'- cGCGCaGCUCACaCGCGgCGAgCGCggCGc -3'
miRNA:   3'- -CGUG-CGGGUG-GCGCgGCUgGCGuaGC- -5'
28149 3' -61.4 NC_005887.1 + 40143 0.76 0.0777
Target:  5'- uGCGCGCUgcgCGCCGCGCUcGCCGCGUg- -3'
miRNA:   3'- -CGUGCGG---GUGGCGCGGcUGGCGUAgc -5'
28149 3' -61.4 NC_005887.1 + 40091 0.66 0.37779
Target:  5'- gGC-CGCCUcgaGCCGCGCCaugaugcgcACCGCGaCGu -3'
miRNA:   3'- -CGuGCGGG---UGGCGCGGc--------UGGCGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 39984 0.66 0.376935
Target:  5'- aCGCGCCCGgcucgauCUGCGCgGcACCGUAUg- -3'
miRNA:   3'- cGUGCGGGU-------GGCGCGgC-UGGCGUAgc -5'
28149 3' -61.4 NC_005887.1 + 39918 0.71 0.171023
Target:  5'- uGCGCGCagAUCGaGCCGGgCGCGUCGa -3'
miRNA:   3'- -CGUGCGggUGGCgCGGCUgGCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 39519 0.66 0.358444
Target:  5'- uCACGCCgCACCaacugGCGCCGGcucuguaccccaauCCGCG-CGa -3'
miRNA:   3'- cGUGCGG-GUGG-----CGCGGCU--------------GGCGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 36578 0.72 0.134521
Target:  5'- cGC-CGCCCgauGCUGCgGUCGACCGCA-CGg -3'
miRNA:   3'- -CGuGCGGG---UGGCG-CGGCUGGCGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 36511 0.69 0.245354
Target:  5'- uGCGgGCUgGCCGaagggcaagaaGCCGGCCGCG-CGg -3'
miRNA:   3'- -CGUgCGGgUGGCg----------CGGCUGGCGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 36379 0.67 0.328804
Target:  5'- ---aGUgCGCgGCGUCGACCGCcgCGc -3'
miRNA:   3'- cgugCGgGUGgCGCGGCUGGCGuaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.