Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2815 | 5' | -58.7 | NC_001491.2 | + | 118616 | 0.69 | 0.515762 |
Target: 5'- --aGCcAGCGCAGCGacuucGCCCCGGaccucuaCGACu -3' miRNA: 3'- aaaCGaUCGCGUCGU-----CGGGGCC-------GUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 121883 | 0.66 | 0.72169 |
Target: 5'- --aGCguggcGCGCAGCGggaagcucuGCUCgGGCAGCa -3' miRNA: 3'- aaaCGau---CGCGUCGU---------CGGGgCCGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 122237 | 0.67 | 0.649949 |
Target: 5'- --gGUUGGCGCuuGCGGCgCUuuuuGGCAGCg -3' miRNA: 3'- aaaCGAUCGCGu-CGUCGgGG----CCGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 123349 | 0.68 | 0.587749 |
Target: 5'- -cUGCgGGCGCgAGCAggcgaacgcguGUCCCaGGCAGCa -3' miRNA: 3'- aaACGaUCGCG-UCGU-----------CGGGG-CCGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 123523 | 0.67 | 0.670654 |
Target: 5'- cUUGCggccgcgGGCGCgcaGGUAcGCCgCGGCGGCu -3' miRNA: 3'- aAACGa------UCGCG---UCGU-CGGgGCCGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 136964 | 0.68 | 0.577454 |
Target: 5'- --aGgUAGCgGCAGCAGCCaCCGccucuGCGGCu -3' miRNA: 3'- aaaCgAUCG-CGUCGUCGG-GGC-----CGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 138125 | 0.67 | 0.680962 |
Target: 5'- --cGCUGGaguugGCGGCccCCCCGGCcGCg -3' miRNA: 3'- aaaCGAUCg----CGUCGucGGGGCCGuUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 138274 | 0.66 | 0.701446 |
Target: 5'- --cGCUgGGUGCgacggggaAGUAGCCCUGGgGACc -3' miRNA: 3'- aaaCGA-UCGCG--------UCGUCGGGGCCgUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 141874 | 0.67 | 0.649949 |
Target: 5'- --aGCUccGGCGaccccggccCAGCccAGCUCCGGCGACc -3' miRNA: 3'- aaaCGA--UCGC---------GUCG--UCGGGGCCGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 144878 | 0.7 | 0.487357 |
Target: 5'- --gGCUGG-GCGGCAGCCgCCGGgGu- -3' miRNA: 3'- aaaCGAUCgCGUCGUCGG-GGCCgUug -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 145362 | 0.7 | 0.468204 |
Target: 5'- --aGCUcuucGGgGUGGCGGCCCCaGCGGCc -3' miRNA: 3'- aaaCGA----UCgCGUCGUCGGGGcCGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 145752 | 0.7 | 0.477733 |
Target: 5'- -cUGCUGcUGCcGCcGCCCCGGUAGCc -3' miRNA: 3'- aaACGAUcGCGuCGuCGGGGCCGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 146405 | 0.71 | 0.413216 |
Target: 5'- gUUGCUGGCuggccgcggcaGCGGCGGCCUgGGCc-- -3' miRNA: 3'- aAACGAUCG-----------CGUCGUCGGGgCCGuug -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 147185 | 0.67 | 0.63957 |
Target: 5'- --aGgUGGCGgucGUAGCCCCGGCGc- -3' miRNA: 3'- aaaCgAUCGCgu-CGUCGGGGCCGUug -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 147215 | 0.69 | 0.546837 |
Target: 5'- --aGCgGGCGUuugucuGGguGgCCCGGCAGCa -3' miRNA: 3'- aaaCGaUCGCG------UCguCgGGGCCGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 148586 | 0.67 | 0.680962 |
Target: 5'- --gGCc-GCGCGGUGGCUCUGcGCGGCg -3' miRNA: 3'- aaaCGauCGCGUCGUCGGGGC-CGUUG- -5' |
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2815 | 5' | -58.7 | NC_001491.2 | + | 148969 | 0.67 | 0.63957 |
Target: 5'- -aUGggAGCGCGGCggagGGCCUgGGCcACg -3' miRNA: 3'- aaACgaUCGCGUCG----UCGGGgCCGuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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