miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28150 5' -56.9 NC_005887.1 + 35126 0.66 0.59804
Target:  5'- gGGCGCgGAUCGgaAUCcggcgccacgGACGGGCGg- -3'
miRNA:   3'- gCUGCGgCUGGU--UAGa---------CUGCCCGCac -5'
28150 5' -56.9 NC_005887.1 + 14373 0.66 0.587112
Target:  5'- uCGGCGUCGGCCugcgCUuGCGGguucaGCGUGa -3'
miRNA:   3'- -GCUGCGGCUGGuua-GAcUGCC-----CGCAC- -5'
28150 5' -56.9 NC_005887.1 + 12214 0.66 0.587112
Target:  5'- gCGAuCGUC-ACCAAUCUGGCGcGCGa- -3'
miRNA:   3'- -GCU-GCGGcUGGUUAGACUGCcCGCac -5'
28150 5' -56.9 NC_005887.1 + 7425 0.66 0.576221
Target:  5'- cCGcCGCCG-CCucGUUUGGCGcuGGCGUGc -3'
miRNA:   3'- -GCuGCGGCuGGu-UAGACUGC--CCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 28162 0.66 0.575135
Target:  5'- uCGcACGCCGACUggUCgucGAgcaacauCGGGCuGUGc -3'
miRNA:   3'- -GC-UGCGGCUGGuuAGa--CU-------GCCCG-CAC- -5'
28150 5' -56.9 NC_005887.1 + 31356 0.66 0.565377
Target:  5'- cCGAUGCCGGUCGAgCUcGACGaGGCGa- -3'
miRNA:   3'- -GCUGCGGCUGGUUaGA-CUGC-CCGCac -5'
28150 5' -56.9 NC_005887.1 + 41272 0.66 0.565377
Target:  5'- uGGCGCCG-UCGAcCUGcgcACGGGCGc- -3'
miRNA:   3'- gCUGCGGCuGGUUaGAC---UGCCCGCac -5'
28150 5' -56.9 NC_005887.1 + 5107 0.66 0.563214
Target:  5'- gCGGCcauuGCCGugCcuucguuggcuucGGUCUGcgccucgGCGGGCGUGa -3'
miRNA:   3'- -GCUG----CGGCugG-------------UUAGAC-------UGCCCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 17693 0.66 0.548141
Target:  5'- aCGGCGCUGACCGucgugcgcagcGUuuccaucuugCgcgcgagcgcgggauUGACGGGCGUGu -3'
miRNA:   3'- -GCUGCGGCUGGU-----------UA----------G---------------ACUGCCCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 27027 0.67 0.533197
Target:  5'- cCGuCGCCGaacgGCCugcagGAUCUGugGGGCcagcaGUGg -3'
miRNA:   3'- -GCuGCGGC----UGG-----UUAGACugCCCG-----CAC- -5'
28150 5' -56.9 NC_005887.1 + 14829 0.67 0.522612
Target:  5'- nGACGCUGAUggcgggCAcgUUcGCGGGCGUGc -3'
miRNA:   3'- gCUGCGGCUG------GUuaGAcUGCCCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 18433 0.67 0.522612
Target:  5'- aCGACGCUGAUCGgcgcgAUCUcGACGcaGGCGa- -3'
miRNA:   3'- -GCUGCGGCUGGU-----UAGA-CUGC--CCGCac -5'
28150 5' -56.9 NC_005887.1 + 40471 0.67 0.522612
Target:  5'- cCGGCGUCGACgAGcUCgauuACGaGGCGUGg -3'
miRNA:   3'- -GCUGCGGCUGgUU-AGac--UGC-CCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 31893 0.67 0.5184
Target:  5'- gGGCGUCGGCCAGccggucaggcaugCUGcugcaagaucCGGGCGUGg -3'
miRNA:   3'- gCUGCGGCUGGUUa------------GACu---------GCCCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 4684 0.68 0.481152
Target:  5'- aGACGgCGAg-GGUCUGAUGGGCGc- -3'
miRNA:   3'- gCUGCgGCUggUUAGACUGCCCGCac -5'
28150 5' -56.9 NC_005887.1 + 930 0.68 0.471035
Target:  5'- gCGGCGCgGGCCAcgCguccACGGGCa-- -3'
miRNA:   3'- -GCUGCGgCUGGUuaGac--UGCCCGcac -5'
28150 5' -56.9 NC_005887.1 + 32419 0.68 0.471035
Target:  5'- aCGugGCCGGCggCGAUgUGGCcGGCGg- -3'
miRNA:   3'- -GCugCGGCUG--GUUAgACUGcCCGCac -5'
28150 5' -56.9 NC_005887.1 + 28768 0.68 0.461028
Target:  5'- uCGACGacuaCGA-CGAUUUcGCGGGCGUGa -3'
miRNA:   3'- -GCUGCg---GCUgGUUAGAcUGCCCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 21640 0.68 0.461028
Target:  5'- aCGAUGCCGG-CAGUaCUGGauGGCGUa -3'
miRNA:   3'- -GCUGCGGCUgGUUA-GACUgcCCGCAc -5'
28150 5' -56.9 NC_005887.1 + 20641 0.68 0.461028
Target:  5'- aCGugGCCGGacuGUCUGuuGCGGGCa-- -3'
miRNA:   3'- -GCugCGGCUgguUAGAC--UGCCCGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.