miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28150 5' -56.9 NC_005887.1 + 572 0.68 0.431701
Target:  5'- aGAcCGCCGGCCA----GAUGGGCGaUGa -3'
miRNA:   3'- gCU-GCGGCUGGUuagaCUGCCCGC-AC- -5'
28150 5' -56.9 NC_005887.1 + 930 0.68 0.471035
Target:  5'- gCGGCGCgGGCCAcgCguccACGGGCa-- -3'
miRNA:   3'- -GCUGCGgCUGGUuaGac--UGCCCGcac -5'
28150 5' -56.9 NC_005887.1 + 2184 0.71 0.313696
Target:  5'- uGACGCCGGCCGcggugAUCgggcagcgcaaaccGAUGGGCGg- -3'
miRNA:   3'- gCUGCGGCUGGU-----UAGa-------------CUGCCCGCac -5'
28150 5' -56.9 NC_005887.1 + 4684 0.68 0.481152
Target:  5'- aGACGgCGAg-GGUCUGAUGGGCGc- -3'
miRNA:   3'- gCUGCgGCUggUUAGACUGCCCGCac -5'
28150 5' -56.9 NC_005887.1 + 5107 0.66 0.563214
Target:  5'- gCGGCcauuGCCGugCcuucguuggcuucGGUCUGcgccucgGCGGGCGUGa -3'
miRNA:   3'- -GCUG----CGGCugG-------------UUAGAC-------UGCCCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 5772 0.72 0.267232
Target:  5'- aGGCGCUGGCCGcgaaGugGGGUGUGu -3'
miRNA:   3'- gCUGCGGCUGGUuagaCugCCCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 6419 0.74 0.194755
Target:  5'- aGGCGCUGGCCGAUCUGaACGGcaacaccGCGg- -3'
miRNA:   3'- gCUGCGGCUGGUUAGAC-UGCC-------CGCac -5'
28150 5' -56.9 NC_005887.1 + 7425 0.66 0.576221
Target:  5'- cCGcCGCCG-CCucGUUUGGCGcuGGCGUGc -3'
miRNA:   3'- -GCuGCGGCuGGu-UAGACUGC--CCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 7604 0.76 0.144791
Target:  5'- gCGGCGCCGGuuGAUC-GAUGGGCGg- -3'
miRNA:   3'- -GCUGCGGCUggUUAGaCUGCCCGCac -5'
28150 5' -56.9 NC_005887.1 + 8934 0.69 0.376482
Target:  5'- aCGGCGUCG--CGAUCUcGACGGGCGc- -3'
miRNA:   3'- -GCUGCGGCugGUUAGA-CUGCCCGCac -5'
28150 5' -56.9 NC_005887.1 + 9772 0.7 0.350716
Target:  5'- cCGACaGCCuGCUGAUCggcaUGACGGGCGaUGa -3'
miRNA:   3'- -GCUG-CGGcUGGUUAG----ACUGCCCGC-AC- -5'
28150 5' -56.9 NC_005887.1 + 12214 0.66 0.587112
Target:  5'- gCGAuCGUC-ACCAAUCUGGCGcGCGa- -3'
miRNA:   3'- -GCU-GCGGcUGGUUAGACUGCcCGCac -5'
28150 5' -56.9 NC_005887.1 + 14097 0.72 0.253899
Target:  5'- uGuACGCCGACCAGaccgccagcuuUCUGAgCGGGCa-- -3'
miRNA:   3'- gC-UGCGGCUGGUU-----------AGACU-GCCCGcac -5'
28150 5' -56.9 NC_005887.1 + 14373 0.66 0.587112
Target:  5'- uCGGCGUCGGCCugcgCUuGCGGguucaGCGUGa -3'
miRNA:   3'- -GCUGCGGCUGGuua-GAcUGCC-----CGCAC- -5'
28150 5' -56.9 NC_005887.1 + 14806 0.73 0.228876
Target:  5'- gGAC-CCGAUCAAUCUGGCGGccGCGa- -3'
miRNA:   3'- gCUGcGGCUGGUUAGACUGCC--CGCac -5'
28150 5' -56.9 NC_005887.1 + 14829 0.67 0.522612
Target:  5'- nGACGCUGAUggcgggCAcgUUcGCGGGCGUGc -3'
miRNA:   3'- gCUGCGGCUG------GUuaGAcUGCCCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 15386 0.7 0.350716
Target:  5'- uCGACGCCGcGCUGAUCgcgcGCGGGCa-- -3'
miRNA:   3'- -GCUGCGGC-UGGUUAGac--UGCCCGcac -5'
28150 5' -56.9 NC_005887.1 + 15437 0.69 0.38535
Target:  5'- gCGGCGUCGACCug-CU--CGGGCGUc -3'
miRNA:   3'- -GCUGCGGCUGGuuaGAcuGCCCGCAc -5'
28150 5' -56.9 NC_005887.1 + 15510 0.71 0.326228
Target:  5'- gGACGCCGGCCAGUUuccgGACGucGCGa- -3'
miRNA:   3'- gCUGCGGCUGGUUAGa---CUGCc-CGCac -5'
28150 5' -56.9 NC_005887.1 + 17693 0.66 0.548141
Target:  5'- aCGGCGCUGACCGucgugcgcagcGUuuccaucuugCgcgcgagcgcgggauUGACGGGCGUGu -3'
miRNA:   3'- -GCUGCGGCUGGU-----------UA----------G---------------ACUGCCCGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.