miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28150 5' -56.9 NC_005887.1 + 41833 0.69 0.412767
Target:  5'- gGGCGaCGACCAcgcgAUCUGGCGGcGCcUGa -3'
miRNA:   3'- gCUGCgGCUGGU----UAGACUGCC-CGcAC- -5'
28150 5' -56.9 NC_005887.1 + 41272 0.66 0.565377
Target:  5'- uGGCGCCG-UCGAcCUGcgcACGGGCGc- -3'
miRNA:   3'- gCUGCGGCuGGUUaGAC---UGCCCGCac -5'
28150 5' -56.9 NC_005887.1 + 40471 0.67 0.522612
Target:  5'- cCGGCGUCGACgAGcUCgauuACGaGGCGUGg -3'
miRNA:   3'- -GCUGCGGCUGgUU-AGac--UGC-CCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 39534 0.68 0.451133
Target:  5'- uGGCGCCGGcucuguaccCCAAUCcgcgcGACGGGCu-- -3'
miRNA:   3'- gCUGCGGCU---------GGUUAGa----CUGCCCGcac -5'
28150 5' -56.9 NC_005887.1 + 38509 0.71 0.318352
Target:  5'- uCGugGCgGGuaUCGGUCUGGCGGGUaggGUGg -3'
miRNA:   3'- -GCugCGgCU--GGUUAGACUGCCCG---CAC- -5'
28150 5' -56.9 NC_005887.1 + 35126 0.66 0.59804
Target:  5'- gGGCGCgGAUCGgaAUCcggcgccacgGACGGGCGg- -3'
miRNA:   3'- gCUGCGgCUGGU--UAGa---------CUGCCCGCac -5'
28150 5' -56.9 NC_005887.1 + 34941 0.73 0.222955
Target:  5'- cCGuCGCCGGCUucGAaCUcGGCGGGCGUGc -3'
miRNA:   3'- -GCuGCGGCUGG--UUaGA-CUGCCCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 34689 0.68 0.461028
Target:  5'- uCGACGCgaaCGGCgAAUggCUGGCGGGCa-- -3'
miRNA:   3'- -GCUGCG---GCUGgUUA--GACUGCCCGcac -5'
28150 5' -56.9 NC_005887.1 + 34289 0.69 0.394354
Target:  5'- cCGuCGCCGugCGG-CUGacuGCGGGCGg- -3'
miRNA:   3'- -GCuGCGGCugGUUaGAC---UGCCCGCac -5'
28150 5' -56.9 NC_005887.1 + 33752 0.77 0.119175
Target:  5'- -cGCGCCGGCCuucacgagcAUCUGGCGcGGCGUGc -3'
miRNA:   3'- gcUGCGGCUGGu--------UAGACUGC-CCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 32419 0.68 0.471035
Target:  5'- aCGugGCCGGCggCGAUgUGGCcGGCGg- -3'
miRNA:   3'- -GCugCGGCUG--GUUAgACUGcCCGCac -5'
28150 5' -56.9 NC_005887.1 + 31893 0.67 0.5184
Target:  5'- gGGCGUCGGCCAGccggucaggcaugCUGcugcaagaucCGGGCGUGg -3'
miRNA:   3'- gCUGCGGCUGGUUa------------GACu---------GCCCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 31356 0.66 0.565377
Target:  5'- cCGAUGCCGGUCGAgCUcGACGaGGCGa- -3'
miRNA:   3'- -GCUGCGGCUGGUUaGA-CUGC-CCGCac -5'
28150 5' -56.9 NC_005887.1 + 30488 0.69 0.38535
Target:  5'- cCGACGUCGGCCuga-UGGUGGGCGa- -3'
miRNA:   3'- -GCUGCGGCUGGuuagACUGCCCGCac -5'
28150 5' -56.9 NC_005887.1 + 30204 0.69 0.390736
Target:  5'- uCGGCGCCGACUuGUacaagcuugcauaUGcACGGGCGUu -3'
miRNA:   3'- -GCUGCGGCUGGuUAg------------AC-UGCCCGCAc -5'
28150 5' -56.9 NC_005887.1 + 28768 0.68 0.461028
Target:  5'- uCGACGacuaCGA-CGAUUUcGCGGGCGUGa -3'
miRNA:   3'- -GCUGCg---GCUgGUUAGAcUGCCCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 28162 0.66 0.575135
Target:  5'- uCGcACGCCGACUggUCgucGAgcaacauCGGGCuGUGc -3'
miRNA:   3'- -GC-UGCGGCUGGuuAGa--CU-------GCCCG-CAC- -5'
28150 5' -56.9 NC_005887.1 + 27027 0.67 0.533197
Target:  5'- cCGuCGCCGaacgGCCugcagGAUCUGugGGGCcagcaGUGg -3'
miRNA:   3'- -GCuGCGGC----UGG-----UUAGACugCCCG-----CAC- -5'
28150 5' -56.9 NC_005887.1 + 21649 1.08 0.000681
Target:  5'- cCGACGCCGACCAAUCUGACGGGCGUGu -3'
miRNA:   3'- -GCUGCGGCUGGUUAGACUGCCCGCAC- -5'
28150 5' -56.9 NC_005887.1 + 21640 0.68 0.461028
Target:  5'- aCGAUGCCGG-CAGUaCUGGauGGCGUa -3'
miRNA:   3'- -GCUGCGGCUgGUUA-GACUgcCCGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.