Results 41 - 60 of 234 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28151 | 5' | -51.3 | NC_005887.1 | + | 17025 | 0.67 | 0.777919 |
Target: 5'- aGGUGCuuggcAACGGAUcgGAUGCGCaGCGGCa -3' miRNA: 3'- -CUACGc----UUGUUUG--UUGCGUGgCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 22065 | 0.67 | 0.788321 |
Target: 5'- --gGCuGAACccACAACcaGCACgGCGGCc -3' miRNA: 3'- cuaCG-CUUGuuUGUUG--CGUGgCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 34307 | 0.67 | 0.788321 |
Target: 5'- -cUGCGGGCGgcaacggguAGCGAgaaaggguuuUGUGCCGUGGCg -3' miRNA: 3'- cuACGCUUGU---------UUGUU----------GCGUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 32291 | 0.67 | 0.788321 |
Target: 5'- cGggGCGAucguCGGGCcagccGGCGCGCCGCaGUg -3' miRNA: 3'- -CuaCGCUu---GUUUG-----UUGCGUGGCGcCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 4390 | 0.67 | 0.798544 |
Target: 5'- --cGuUGAACAAgGCAAUGCGCgccggcgaaggCGCGGCg -3' miRNA: 3'- cuaC-GCUUGUU-UGUUGCGUG-----------GCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 6426 | 0.67 | 0.798544 |
Target: 5'- --gGCcGAUcuGAACGGCaaCACCGCGGCa -3' miRNA: 3'- cuaCGcUUG--UUUGUUGc-GUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 12958 | 0.67 | 0.805588 |
Target: 5'- --cGCGAcgcuACAgcaauccagaccgaAGCGGCGaC-CCGCGGCa -3' miRNA: 3'- cuaCGCU----UGU--------------UUGUUGC-GuGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 19544 | 0.67 | 0.807582 |
Target: 5'- --cGUGGACGGACGGCGUcgauuacGuuGCaGGCa -3' miRNA: 3'- cuaCGCUUGUUUGUUGCG-------UggCG-CCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 20822 | 0.67 | 0.815478 |
Target: 5'- uGcgGCGGACAacuacaucaucgcuAACAACaacCugCGCGGUa -3' miRNA: 3'- -CuaCGCUUGU--------------UUGUUGc--GugGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 9821 | 0.67 | 0.818404 |
Target: 5'- --cGCGAACGcgucGCAGCcgguCAgCGCGGCc -3' miRNA: 3'- cuaCGCUUGUu---UGUUGc---GUgGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 24604 | 0.67 | 0.788321 |
Target: 5'- cGcgGCGAugAucuuGCGGcCGCACgCGUGGUc -3' miRNA: 3'- -CuaCGCUugUu---UGUU-GCGUG-GCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 37095 | 0.67 | 0.798544 |
Target: 5'- --aGCGGGCGAGCAcagccucgGCGaucgCGCGGCc -3' miRNA: 3'- cuaCGCUUGUUUGU--------UGCgug-GCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 19191 | 0.67 | 0.808576 |
Target: 5'- --cGCGGGCGuggaGACAG-GCGgCGCGGUu -3' miRNA: 3'- cuaCGCUUGU----UUGUUgCGUgGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 24445 | 0.67 | 0.808576 |
Target: 5'- --cGCGAGCAGGacACGCagcaucagGCCGuUGGCg -3' miRNA: 3'- cuaCGCUUGUUUguUGCG--------UGGC-GCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 37432 | 0.67 | 0.808576 |
Target: 5'- aGGUGCGGAguGgagcGCGGCGCuuGCCugcGCGGUu -3' miRNA: 3'- -CUACGCUUguU----UGUUGCG--UGG---CGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 30017 | 0.67 | 0.812532 |
Target: 5'- --cGUGAACGuGACgAACGCGCCGacgccacccucauaGGCg -3' miRNA: 3'- cuaCGCUUGU-UUG-UUGCGUGGCg-------------CCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 33737 | 0.67 | 0.812532 |
Target: 5'- cGcgGCGAGgAu-CAGCGCGCCGgccuucacgagcaucUGGCg -3' miRNA: 3'- -CuaCGCUUgUuuGUUGCGUGGC---------------GCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 20150 | 0.67 | 0.818404 |
Target: 5'- gGAUGCGcaaacguCAAGCGGCGgCGCCGuuGUu -3' miRNA: 3'- -CUACGCuu-----GUUUGUUGC-GUGGCgcCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 37693 | 0.67 | 0.818404 |
Target: 5'- --cGCauGCAAGCGACGC-CgGgGGCg -3' miRNA: 3'- cuaCGcuUGUUUGUUGCGuGgCgCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 26698 | 0.67 | 0.818404 |
Target: 5'- --cGCGAuACAGcCGucGCGCgGCCGCGGg -3' miRNA: 3'- cuaCGCU-UGUUuGU--UGCG-UGGCGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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