miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 5' -51.3 NC_005887.1 + 809 0.66 0.837403
Target:  5'- cGAUcGCGAucaACAGcCAugcucGCGCgAUCGCGGCc -3'
miRNA:   3'- -CUA-CGCU---UGUUuGU-----UGCG-UGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 11058 0.66 0.837403
Target:  5'- --cGUGGACAcuGAUuucCGCGCCGCuGCu -3'
miRNA:   3'- cuaCGCUUGU--UUGuu-GCGUGGCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 16101 0.66 0.855453
Target:  5'- --gGUGGugAAACGcuuuccgguggcGCuGCGCCGCGcGCa -3'
miRNA:   3'- cuaCGCUugUUUGU------------UG-CGUGGCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 28917 0.66 0.861531
Target:  5'- gGAUGCGcGCGcccauugcgucgacGACAGCgaGCACUgGCGGUc -3'
miRNA:   3'- -CUACGCuUGU--------------UUGUUG--CGUGG-CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 36509 0.66 0.846552
Target:  5'- cGUGCGGuCGAccgcaGCAuCGgGCgGCGGCa -3'
miRNA:   3'- cUACGCUuGUU-----UGUuGCgUGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 10390 0.66 0.864097
Target:  5'- --gGCGGACGAuuGCGGCucgucauccuGCAgCGCGGg -3'
miRNA:   3'- cuaCGCUUGUU--UGUUG----------CGUgGCGCCg -5'
28151 5' -51.3 NC_005887.1 + 31393 0.66 0.864097
Target:  5'- --gGCGuAGCGGu--GCGUGCCGUGGUu -3'
miRNA:   3'- cuaCGC-UUGUUuguUGCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 13214 0.66 0.828017
Target:  5'- --cGCGcGGCAAGCGACGagacgagGCC-CGGCa -3'
miRNA:   3'- cuaCGC-UUGUUUGUUGCg------UGGcGCCG- -5'
28151 5' -51.3 NC_005887.1 + 18225 0.66 0.863244
Target:  5'- cAUGcCGAGCAGcuucggcACGACGU-CgGCGGCc -3'
miRNA:   3'- cUAC-GCUUGUU-------UGUUGCGuGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 18361 0.66 0.864097
Target:  5'- --gGCGAcuuccGCGuaGACGGCGCGCCG-GcGCu -3'
miRNA:   3'- cuaCGCU-----UGU--UUGUUGCGUGGCgC-CG- -5'
28151 5' -51.3 NC_005887.1 + 41285 0.66 0.846552
Target:  5'- -cUGCGcACGGGC-GCGCugcuGCCGCcgGGCa -3'
miRNA:   3'- cuACGCuUGUUUGuUGCG----UGGCG--CCG- -5'
28151 5' -51.3 NC_005887.1 + 24950 0.66 0.837403
Target:  5'- cGUGCGcGCGGGCcgccuuGCGCGCgGCcGCg -3'
miRNA:   3'- cUACGCuUGUUUGu-----UGCGUGgCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 465 0.66 0.837403
Target:  5'- uGGUGCGGGCAugAGCAAgcugacCGCAaaGCaGCa -3'
miRNA:   3'- -CUACGCUUGU--UUGUU------GCGUggCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 28060 0.66 0.864097
Target:  5'- --cGCcGGCcGACGACGCgauucggcccgaGCCGgCGGCg -3'
miRNA:   3'- cuaCGcUUGuUUGUUGCG------------UGGC-GCCG- -5'
28151 5' -51.3 NC_005887.1 + 12759 0.66 0.837403
Target:  5'- cGUGCGcGCGugacccuGCAACGCGauaagcuucguCgGCGGCa -3'
miRNA:   3'- cUACGCuUGUu------UGUUGCGU-----------GgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 14712 0.66 0.855453
Target:  5'- --gGCG-ACGGGCA--GCACCGCgccGGCu -3'
miRNA:   3'- cuaCGCuUGUUUGUugCGUGGCG---CCG- -5'
28151 5' -51.3 NC_005887.1 + 10786 0.66 0.837403
Target:  5'- --cGCcauCGAACAGCgGCACCGC-GCg -3'
miRNA:   3'- cuaCGcuuGUUUGUUG-CGUGGCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 28625 0.66 0.825157
Target:  5'- --aGCGGGC-GGCGACGCcuacaaauucagcaGCC-CGGCg -3'
miRNA:   3'- cuaCGCUUGuUUGUUGCG--------------UGGcGCCG- -5'
28151 5' -51.3 NC_005887.1 + 9821 0.67 0.818404
Target:  5'- --cGCGAACGcgucGCAGCcgguCAgCGCGGCc -3'
miRNA:   3'- cuaCGCUUGUu---UGUUGc---GUgGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 20822 0.67 0.815478
Target:  5'- uGcgGCGGACAacuacaucaucgcuAACAACaacCugCGCGGUa -3'
miRNA:   3'- -CuaCGCUUGU--------------UUGUUGc--GugGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.