miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 5' -51.3 NC_005887.1 + 465 0.66 0.837403
Target:  5'- uGGUGCGGGCAugAGCAAgcugacCGCAaaGCaGCa -3'
miRNA:   3'- -CUACGCUUGU--UUGUU------GCGUggCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 41285 0.66 0.846552
Target:  5'- -cUGCGcACGGGC-GCGCugcuGCCGCcgGGCa -3'
miRNA:   3'- cuACGCuUGUUUGuUGCG----UGGCG--CCG- -5'
28151 5' -51.3 NC_005887.1 + 25477 0.66 0.828017
Target:  5'- -uUGCuuGGGC--ACAACGCAgCgGCGGCu -3'
miRNA:   3'- cuACG--CUUGuuUGUUGCGU-GgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 809 0.66 0.837403
Target:  5'- cGAUcGCGAucaACAGcCAugcucGCGCgAUCGCGGCc -3'
miRNA:   3'- -CUA-CGCU---UGUUuGU-----UGCG-UGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 14982 0.66 0.846552
Target:  5'- --cGcCGcGCAGGCcGCGCagGCCGCaGGCg -3'
miRNA:   3'- cuaC-GCuUGUUUGuUGCG--UGGCG-CCG- -5'
28151 5' -51.3 NC_005887.1 + 41410 0.66 0.846552
Target:  5'- cGAUGcCGAGCAGGucgaauucuucCAGCGCcUCGUGGg -3'
miRNA:   3'- -CUAC-GCUUGUUU-----------GUUGCGuGGCGCCg -5'
28151 5' -51.3 NC_005887.1 + 11058 0.66 0.837403
Target:  5'- --cGUGGACAcuGAUuucCGCGCCGCuGCu -3'
miRNA:   3'- cuaCGCUUGU--UUGuu-GCGUGGCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 15849 0.66 0.828017
Target:  5'- --cGCGAuCGAGggaAACGC-CCGCGcGCa -3'
miRNA:   3'- cuaCGCUuGUUUg--UUGCGuGGCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 36509 0.66 0.846552
Target:  5'- cGUGCGGuCGAccgcaGCAuCGgGCgGCGGCa -3'
miRNA:   3'- cUACGCUuGUU-----UGUuGCgUGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 40004 0.66 0.837403
Target:  5'- cAUGCaGGACGucGCGguGCGCAUcauggCGCGGCu -3'
miRNA:   3'- cUACG-CUUGUu-UGU--UGCGUG-----GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 2608 0.66 0.846552
Target:  5'- --gGCGGACAaaAACAuguacuCGCA-CGUGGCc -3'
miRNA:   3'- cuaCGCUUGU--UUGUu-----GCGUgGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 16248 0.66 0.846552
Target:  5'- --gGCGAGCGcACGG-GCACCGUcGCc -3'
miRNA:   3'- cuaCGCUUGUuUGUUgCGUGGCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 16101 0.66 0.855453
Target:  5'- --gGUGGugAAACGcuuuccgguggcGCuGCGCCGCGcGCa -3'
miRNA:   3'- cuaCGCUugUUUGU------------UG-CGUGGCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 24950 0.66 0.837403
Target:  5'- cGUGCGcGCGGGCcgccuuGCGCGCgGCcGCg -3'
miRNA:   3'- cUACGCuUGUUUGu-----UGCGUGgCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 14704 0.66 0.828017
Target:  5'- cGcgGCGGGCGGGCcgGGCGCGgCGaucgcgcaGGCg -3'
miRNA:   3'- -CuaCGCUUGUUUG--UUGCGUgGCg-------CCG- -5'
28151 5' -51.3 NC_005887.1 + 34699 0.66 0.846552
Target:  5'- --aGCGGGCGGcCGucguCGCGCUuGCGGUg -3'
miRNA:   3'- cuaCGCUUGUUuGUu---GCGUGG-CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 18065 0.66 0.828017
Target:  5'- cGAUcGUGAACAAG--GCGaCGCC-CGGCa -3'
miRNA:   3'- -CUA-CGCUUGUUUguUGC-GUGGcGCCG- -5'
28151 5' -51.3 NC_005887.1 + 14945 0.66 0.828017
Target:  5'- --cGCGcGCugccguACGACGCGCCGCa-- -3'
miRNA:   3'- cuaCGCuUGuu----UGUUGCGUGGCGccg -5'
28151 5' -51.3 NC_005887.1 + 32442 0.66 0.855453
Target:  5'- gGcgGCGAuCAGguugcGCAGCcaCugCGCGGCg -3'
miRNA:   3'- -CuaCGCUuGUU-----UGUUGc-GugGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 5405 0.66 0.846552
Target:  5'- --gGUGAACcGGCgGGCgGCGCCGCaGCg -3'
miRNA:   3'- cuaCGCUUGuUUG-UUG-CGUGGCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.