miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 5' -51.3 NC_005887.1 + 293 0.68 0.72368
Target:  5'- -cUGCGuGGCGugauCAGCGagGCCGCGGUg -3'
miRNA:   3'- cuACGC-UUGUuu--GUUGCg-UGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 386 0.75 0.366565
Target:  5'- uGGUGCGAaaagacggGCAAGCGccgcgaagACGCGCCGCGccGCc -3'
miRNA:   3'- -CUACGCU--------UGUUUGU--------UGCGUGGCGC--CG- -5'
28151 5' -51.3 NC_005887.1 + 401 0.72 0.48701
Target:  5'- cAUGCGAcggcucGCGcACuuccucgguguacgcGCGCACCGCGGCc -3'
miRNA:   3'- cUACGCU------UGUuUGu--------------UGCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 465 0.66 0.837403
Target:  5'- uGGUGCGGGCAugAGCAAgcugacCGCAaaGCaGCa -3'
miRNA:   3'- -CUACGCUUGU--UUGUU------GCGUggCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 477 0.77 0.268979
Target:  5'- --aGCGGGCGGcGCGGCGCGucuUCGCGGCg -3'
miRNA:   3'- cuaCGCUUGUU-UGUUGCGU---GGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 611 0.68 0.767351
Target:  5'- --cGCGcuguauccGGC--GCGGCGCGCgGCGGCc -3'
miRNA:   3'- cuaCGC--------UUGuuUGUUGCGUGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 636 0.69 0.689827
Target:  5'- --cGCGAugAAA--GCGCGCgGCGaGCg -3'
miRNA:   3'- cuaCGCUugUUUguUGCGUGgCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 755 0.69 0.663483
Target:  5'- --gGCGAGCAgcaucgacucggcgAGCAGCaGCACCugguCGGCg -3'
miRNA:   3'- cuaCGCUUGU--------------UUGUUG-CGUGGc---GCCG- -5'
28151 5' -51.3 NC_005887.1 + 809 0.66 0.837403
Target:  5'- cGAUcGCGAucaACAGcCAugcucGCGCgAUCGCGGCc -3'
miRNA:   3'- -CUA-CGCU---UGUUuGU-----UGCG-UGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 884 0.66 0.846552
Target:  5'- --cGCGAucgcGCGAGCAugGCuguugaucgcgAUCGCGaGCu -3'
miRNA:   3'- cuaCGCU----UGUUUGUugCG-----------UGGCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 979 0.68 0.72368
Target:  5'- cGAUGCGggUc-GCGACGCggaucgaaGCCGaGGCc -3'
miRNA:   3'- -CUACGCuuGuuUGUUGCG--------UGGCgCCG- -5'
28151 5' -51.3 NC_005887.1 + 1071 0.66 0.828017
Target:  5'- cGGUGU--AC-AGCGcGCGCACgGCGGCc -3'
miRNA:   3'- -CUACGcuUGuUUGU-UGCGUGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 1413 0.69 0.689827
Target:  5'- --aGCGcuCGAGCGucuCGCcCUGCGGCu -3'
miRNA:   3'- cuaCGCuuGUUUGUu--GCGuGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 1462 0.75 0.339176
Target:  5'- uGUGCGAGCAggagcccgacgccGACGGCGUGCggcgcucgCGCGGCg -3'
miRNA:   3'- cUACGCUUGU-------------UUGUUGCGUG--------GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 1552 0.67 0.798544
Target:  5'- --cGCGccgcGCGAGCGcCGCacGCCGuCGGCg -3'
miRNA:   3'- cuaCGCu---UGUUUGUuGCG--UGGC-GCCG- -5'
28151 5' -51.3 NC_005887.1 + 1693 0.68 0.767351
Target:  5'- ---cCGAGCAcgAGCGcaaGCugCGCGGCa -3'
miRNA:   3'- cuacGCUUGU--UUGUug-CGugGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 2194 0.69 0.678404
Target:  5'- cGcgGUGAuCGGGCAGCGCaaACCgauggGCGGCu -3'
miRNA:   3'- -CuaCGCUuGUUUGUUGCG--UGG-----CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 2350 0.7 0.609274
Target:  5'- --gGCGGGCGAcCAGCGC-UCGCaGGCc -3'
miRNA:   3'- cuaCGCUUGUUuGUUGCGuGGCG-CCG- -5'
28151 5' -51.3 NC_005887.1 + 2608 0.66 0.846552
Target:  5'- --gGCGGACAaaAACAuguacuCGCA-CGUGGCc -3'
miRNA:   3'- cuaCGCUUGU--UUGUu-----GCGUgGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 2665 0.69 0.678404
Target:  5'- --cGCGGGCGAGCAcaaGCACC-UGGUg -3'
miRNA:   3'- cuaCGCUUGUUUGUug-CGUGGcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.