miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 5' -51.3 NC_005887.1 + 35650 0.72 0.48272
Target:  5'- cGGUGCGAgcucgacgcugucgACAuacAGCAGCGCGCgaucgGCGGCc -3'
miRNA:   3'- -CUACGCU--------------UGU---UUGUUGCGUGg----CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 8690 0.75 0.366565
Target:  5'- cGGUGCaGGGCccGGCGAUcCGCCGCGGCg -3'
miRNA:   3'- -CUACG-CUUGu-UUGUUGcGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 16835 0.75 0.372956
Target:  5'- --cGCGAugGAgcGCGACaucauccgcgagguGUACCGCGGCg -3'
miRNA:   3'- cuaCGCUugUU--UGUUG--------------CGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 16942 0.74 0.394484
Target:  5'- cGAUGCguGAGCGcuuCAAcCGCGCgGCGGCa -3'
miRNA:   3'- -CUACG--CUUGUuu-GUU-GCGUGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 30711 0.73 0.432771
Target:  5'- aGGUGC--GCGAGCAgcuugucGCGCugCGUGGCc -3'
miRNA:   3'- -CUACGcuUGUUUGU-------UGCGugGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 12414 0.73 0.433781
Target:  5'- --aGCa---GGGCAACGaCACCGCGGCg -3'
miRNA:   3'- cuaCGcuugUUUGUUGC-GUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 15244 0.73 0.443955
Target:  5'- --gGCGGcccgaaGCAGGCAGCcgcaguGCugCGCGGCg -3'
miRNA:   3'- cuaCGCU------UGUUUGUUG------CGugGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 4606 0.73 0.443955
Target:  5'- aGAUGC-AACAGAU-GCuCGCCGCGGCg -3'
miRNA:   3'- -CUACGcUUGUUUGuUGcGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 30608 0.73 0.454263
Target:  5'- --cGCGAGCAAcucgcGCAGCGCGUC-CGGCa -3'
miRNA:   3'- cuaCGCUUGUU-----UGUUGCGUGGcGCCG- -5'
28151 5' -51.3 NC_005887.1 + 386 0.75 0.366565
Target:  5'- uGGUGCGAaaagacggGCAAGCGccgcgaagACGCGCCGCGccGCc -3'
miRNA:   3'- -CUACGCU--------UGUUUGU--------UGCGUGGCGC--CG- -5'
28151 5' -51.3 NC_005887.1 + 13426 0.75 0.348722
Target:  5'- -cUGCuGAcgACGAGCGGCGCACCGCucaGCa -3'
miRNA:   3'- cuACG-CU--UGUUUGUUGCGUGGCGc--CG- -5'
28151 5' -51.3 NC_005887.1 + 1462 0.75 0.339176
Target:  5'- uGUGCGAGCAggagcccgacgccGACGGCGUGCggcgcucgCGCGGCg -3'
miRNA:   3'- cUACGCUUGU-------------UUGUUGCGUG--------GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 30799 0.82 0.125647
Target:  5'- --cGCGAuCAAugGcGCGCACCGCGGCc -3'
miRNA:   3'- cuaCGCUuGUUugU-UGCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 28523 0.79 0.215717
Target:  5'- cGAUGCGGuCAGGCAcgcucacGCGCGCCG-GGCu -3'
miRNA:   3'- -CUACGCUuGUUUGU-------UGCGUGGCgCCG- -5'
28151 5' -51.3 NC_005887.1 + 11112 0.78 0.228593
Target:  5'- uGGUGCGcGCGAAgcuggcCGAgGCGCCGUGGCg -3'
miRNA:   3'- -CUACGCuUGUUU------GUUgCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 17298 0.78 0.241453
Target:  5'- --cGCGcGCAAACGccgguucgGCGCACCGCGuGCu -3'
miRNA:   3'- cuaCGCuUGUUUGU--------UGCGUGGCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 2915 0.78 0.250811
Target:  5'- --cGCGAACGAcgccgccgccaagcuGCGcaaGCGCCGCGGCa -3'
miRNA:   3'- cuaCGCUUGUU---------------UGUug-CGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 14851 0.76 0.29048
Target:  5'- --cGCGGGCGugcacaccgcagcAACAGCGCGCaccgCGCGGCa -3'
miRNA:   3'- cuaCGCUUGU-------------UUGUUGCGUG----GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 3914 0.76 0.291245
Target:  5'- gGAUgGCGAAC-GACAugGCGaagaccaacauCCGCGGCg -3'
miRNA:   3'- -CUA-CGCUUGuUUGUugCGU-----------GGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 13613 0.76 0.323138
Target:  5'- -cUGCuGGCAGcGCGGCGCGCgGCGGCc -3'
miRNA:   3'- cuACGcUUGUU-UGUUGCGUGgCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.