miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 5' -51.3 NC_005887.1 + 28060 0.66 0.864097
Target:  5'- --cGCcGGCcGACGACGCgauucggcccgaGCCGgCGGCg -3'
miRNA:   3'- cuaCGcUUGuUUGUUGCG------------UGGC-GCCG- -5'
28151 5' -51.3 NC_005887.1 + 1552 0.67 0.798544
Target:  5'- --cGCGccgcGCGAGCGcCGCacGCCGuCGGCg -3'
miRNA:   3'- cuaCGCu---UGUUUGUuGCG--UGGC-GCCG- -5'
28151 5' -51.3 NC_005887.1 + 17143 0.67 0.792433
Target:  5'- -uUGCGAGCGgucgagcagcggcauGACGGCGUccgcccaagcguGCCGCuGCg -3'
miRNA:   3'- cuACGCUUGU---------------UUGUUGCG------------UGGCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 4564 0.81 0.149636
Target:  5'- --gGCGAGCAGACGcgcgaugcGCGCGCCGUucGGCa -3'
miRNA:   3'- cuaCGCUUGUUUGU--------UGCGUGGCG--CCG- -5'
28151 5' -51.3 NC_005887.1 + 3402 0.66 0.855453
Target:  5'- --cGCGAucuCGuuCAGCGCAUCGuuGCc -3'
miRNA:   3'- cuaCGCUu--GUuuGUUGCGUGGCgcCG- -5'
28151 5' -51.3 NC_005887.1 + 14977 0.66 0.855453
Target:  5'- cGAUcGCGAGUGAuuGCAGCgGCACCGUaGCa -3'
miRNA:   3'- -CUA-CGCUUGUU--UGUUG-CGUGGCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 30901 0.66 0.854574
Target:  5'- cAUGCGcGGCAugcagAugGACGUcgaacuggccgagGCCGCGGUg -3'
miRNA:   3'- cUACGC-UUGU-----UugUUGCG-------------UGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 884 0.66 0.846552
Target:  5'- --cGCGAucgcGCGAGCAugGCuguugaucgcgAUCGCGaGCu -3'
miRNA:   3'- cuaCGCU----UGUUUGUugCG-----------UGGCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 10786 0.66 0.837403
Target:  5'- --cGCcauCGAACAGCgGCACCGC-GCg -3'
miRNA:   3'- cuaCGcuuGUUUGUUG-CGUGGCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 24747 0.67 0.808576
Target:  5'- --gGCGGuc-GAgGAUGCcgGCCGCGGCu -3'
miRNA:   3'- cuaCGCUuguUUgUUGCG--UGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 13214 0.66 0.828017
Target:  5'- --cGCGcGGCAAGCGACGagacgagGCC-CGGCa -3'
miRNA:   3'- cuaCGC-UUGUUUGUUGCg------UGGcGCCG- -5'
28151 5' -51.3 NC_005887.1 + 10551 0.66 0.837403
Target:  5'- cGAUGCGGACcagucGAGCGugauCGCGCC--GGCc -3'
miRNA:   3'- -CUACGCUUG-----UUUGUu---GCGUGGcgCCG- -5'
28151 5' -51.3 NC_005887.1 + 10390 0.66 0.864097
Target:  5'- --gGCGGACGAuuGCGGCucgucauccuGCAgCGCGGg -3'
miRNA:   3'- cuaCGCUUGUU--UGUUG----------CGUgGCGCCg -5'
28151 5' -51.3 NC_005887.1 + 28625 0.66 0.825157
Target:  5'- --aGCGGGC-GGCGACGCcuacaaauucagcaGCC-CGGCg -3'
miRNA:   3'- cuaCGCUUGuUUGUUGCG--------------UGGcGCCG- -5'
28151 5' -51.3 NC_005887.1 + 36470 0.66 0.864097
Target:  5'- cGGUGCGcaaaugaacCAGACcAC-CAUCGCGGCc -3'
miRNA:   3'- -CUACGCuu-------GUUUGuUGcGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 12759 0.66 0.837403
Target:  5'- cGUGCGcGCGugacccuGCAACGCGauaagcuucguCgGCGGCa -3'
miRNA:   3'- cUACGCuUGUu------UGUUGCGU-----------GgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 40989 0.67 0.818404
Target:  5'- -uUGcCGAACu--CggUGCGCgCGCGGUa -3'
miRNA:   3'- cuAC-GCUUGuuuGuuGCGUG-GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 2985 0.67 0.798544
Target:  5'- -uUGCGcAGCuuggcGGCGGCGUcguUCGCGGCg -3'
miRNA:   3'- cuACGC-UUGu----UUGUUGCGu--GGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 18225 0.66 0.863244
Target:  5'- cAUGcCGAGCAGcuucggcACGACGU-CgGCGGCc -3'
miRNA:   3'- cUAC-GCUUGUU-------UGUUGCGuGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 14712 0.66 0.855453
Target:  5'- --gGCG-ACGGGCA--GCACCGCgccGGCu -3'
miRNA:   3'- cuaCGCuUGUUUGUugCGUGGCG---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.