miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 5' -51.3 NC_005887.1 + 23344 1.13 0.000913
Target:  5'- aGAUGCGAACAAACAACGCACCGCGGCg -3'
miRNA:   3'- -CUACGCUUGUUUGUUGCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 30799 0.82 0.125647
Target:  5'- --cGCGAuCAAugGcGCGCACCGCGGCc -3'
miRNA:   3'- cuaCGCUuGUUugU-UGCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 4564 0.81 0.149636
Target:  5'- --gGCGAGCAGACGcgcgaugcGCGCGCCGUucGGCa -3'
miRNA:   3'- cuaCGCUUGUUUGU--------UGCGUGGCG--CCG- -5'
28151 5' -51.3 NC_005887.1 + 18481 0.8 0.177721
Target:  5'- --aGCGucguGCuGACGACgGCGCCGCGGCg -3'
miRNA:   3'- cuaCGCu---UGuUUGUUG-CGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 28523 0.79 0.215717
Target:  5'- cGAUGCGGuCAGGCAcgcucacGCGCGCCG-GGCu -3'
miRNA:   3'- -CUACGCUuGUUUGU-------UGCGUGGCgCCG- -5'
28151 5' -51.3 NC_005887.1 + 14577 0.79 0.216316
Target:  5'- --cGCGccuGCAAGCGGaccaccaaGCACCGCGGCg -3'
miRNA:   3'- cuaCGCu--UGUUUGUUg-------CGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 11112 0.78 0.228593
Target:  5'- uGGUGCGcGCGAAgcuggcCGAgGCGCCGUGGCg -3'
miRNA:   3'- -CUACGCuUGUUU------GUUgCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 4025 0.78 0.231118
Target:  5'- --cGCGAGCAAcgGCGggucgacgagcuucuGCGCGCCGCGGa -3'
miRNA:   3'- cuaCGCUUGUU--UGU---------------UGCGUGGCGCCg -5'
28151 5' -51.3 NC_005887.1 + 17298 0.78 0.241453
Target:  5'- --cGCGcGCAAACGccgguucgGCGCACCGCGuGCu -3'
miRNA:   3'- cuaCGCuUGUUUGU--------UGCGUGGCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 2915 0.78 0.250811
Target:  5'- --cGCGAACGAcgccgccgccaagcuGCGcaaGCGCCGCGGCa -3'
miRNA:   3'- cuaCGCUUGUU---------------UGUug-CGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 42111 0.77 0.268261
Target:  5'- --gGCGAGCAGGuccaugucCGccuuguacgcaucGCGCGCCGCGGCg -3'
miRNA:   3'- cuaCGCUUGUUU--------GU-------------UGCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 21353 0.77 0.268979
Target:  5'- aAUGUGGGCGAcgccaGCAGCGCauacgccgccGCCGCGGUg -3'
miRNA:   3'- cUACGCUUGUU-----UGUUGCG----------UGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 23438 0.77 0.268979
Target:  5'- --cGCGAGCAGcaaaagcaucuGCGA-GCGCCGCGGUg -3'
miRNA:   3'- cuaCGCUUGUU-----------UGUUgCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 477 0.77 0.268979
Target:  5'- --aGCGGGCGGcGCGGCGCGucuUCGCGGCg -3'
miRNA:   3'- cuaCGCUUGUU-UGUUGCGU---GGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 14851 0.76 0.29048
Target:  5'- --cGCGGGCGugcacaccgcagcAACAGCGCGCaccgCGCGGCa -3'
miRNA:   3'- cuaCGCUUGU-------------UUGUUGCGUG----GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 3914 0.76 0.291245
Target:  5'- gGAUgGCGAAC-GACAugGCGaagaccaacauCCGCGGCg -3'
miRNA:   3'- -CUA-CGCUUGuUUGUugCGU-----------GGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 13613 0.76 0.323138
Target:  5'- -cUGCuGGCAGcGCGGCGCGCgGCGGCc -3'
miRNA:   3'- cuACGcUUGUU-UGUUGCGUGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 39864 0.76 0.331508
Target:  5'- aGUGCGAAguGACGACGCGCgcaacgaucggCGCGaGCg -3'
miRNA:   3'- cUACGCUUguUUGUUGCGUG-----------GCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 27738 0.76 0.331508
Target:  5'- uGAUGCaGACGAuCAAgcCGCGCgCGCGGCa -3'
miRNA:   3'- -CUACGcUUGUUuGUU--GCGUG-GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 25735 0.76 0.331508
Target:  5'- -cUGaCcGACGAugGCGACGCGCUGCGGCu -3'
miRNA:   3'- cuAC-GcUUGUU--UGUUGCGUGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.