miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 5' -51.3 NC_005887.1 + 1462 0.75 0.339176
Target:  5'- uGUGCGAGCAggagcccgacgccGACGGCGUGCggcgcucgCGCGGCg -3'
miRNA:   3'- cUACGCUUGU-------------UUGUUGCGUG--------GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 13426 0.75 0.348722
Target:  5'- -cUGCuGAcgACGAGCGGCGCACCGCucaGCa -3'
miRNA:   3'- cuACG-CU--UGUUUGUUGCGUGGCGc--CG- -5'
28151 5' -51.3 NC_005887.1 + 386 0.75 0.366565
Target:  5'- uGGUGCGAaaagacggGCAAGCGccgcgaagACGCGCCGCGccGCc -3'
miRNA:   3'- -CUACGCU--------UGUUUGU--------UGCGUGGCGC--CG- -5'
28151 5' -51.3 NC_005887.1 + 6360 0.75 0.366565
Target:  5'- cGGUGUGGGCAGACcggugcgaaccGACGUGCgGUGGCc -3'
miRNA:   3'- -CUACGCUUGUUUG-----------UUGCGUGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 8690 0.75 0.366565
Target:  5'- cGGUGCaGGGCccGGCGAUcCGCCGCGGCg -3'
miRNA:   3'- -CUACG-CUUGu-UUGUUGcGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 16835 0.75 0.372956
Target:  5'- --cGCGAugGAgcGCGACaucauccgcgagguGUACCGCGGCg -3'
miRNA:   3'- cuaCGCUugUU--UGUUG--------------CGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 38006 0.74 0.385026
Target:  5'- gGAUGCGGGCugauucAACAACGCgcgccuGCUGgGGCa -3'
miRNA:   3'- -CUACGCUUGu-----UUGUUGCG------UGGCgCCG- -5'
28151 5' -51.3 NC_005887.1 + 16942 0.74 0.394484
Target:  5'- cGAUGCguGAGCGcuuCAAcCGCGCgGCGGCa -3'
miRNA:   3'- -CUACG--CUUGUuu-GUU-GCGUGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 30711 0.73 0.432771
Target:  5'- aGGUGC--GCGAGCAgcuugucGCGCugCGUGGCc -3'
miRNA:   3'- -CUACGcuUGUUUGU-------UGCGugGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 29126 0.73 0.433781
Target:  5'- uAUGCGGuugaGAACGAUGUACCGgcCGGCg -3'
miRNA:   3'- cUACGCUug--UUUGUUGCGUGGC--GCCG- -5'
28151 5' -51.3 NC_005887.1 + 12414 0.73 0.433781
Target:  5'- --aGCa---GGGCAACGaCACCGCGGCg -3'
miRNA:   3'- cuaCGcuugUUUGUUGC-GUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 15244 0.73 0.443955
Target:  5'- --gGCGGcccgaaGCAGGCAGCcgcaguGCugCGCGGCg -3'
miRNA:   3'- cuaCGCU------UGUUUGUUG------CGugGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 4606 0.73 0.443955
Target:  5'- aGAUGC-AACAGAU-GCuCGCCGCGGCg -3'
miRNA:   3'- -CUACGcUUGUUUGuUGcGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 30608 0.73 0.454263
Target:  5'- --cGCGAGCAAcucgcGCAGCGCGUC-CGGCa -3'
miRNA:   3'- cuaCGCUUGUU-----UGUUGCGUGGcGCCG- -5'
28151 5' -51.3 NC_005887.1 + 26623 0.73 0.454263
Target:  5'- --gGaCGAcgGCAgcGACAcCGCACCGUGGCa -3'
miRNA:   3'- cuaC-GCU--UGU--UUGUuGCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 25615 0.73 0.475258
Target:  5'- --cGCGGaagcagcuACGAAC-GCGCACCGCucGGCg -3'
miRNA:   3'- cuaCGCU--------UGUUUGuUGCGUGGCG--CCG- -5'
28151 5' -51.3 NC_005887.1 + 33352 0.73 0.475258
Target:  5'- --cGCGGAUGGAaguGCGCcgGCUGCGGCg -3'
miRNA:   3'- cuaCGCUUGUUUgu-UGCG--UGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 35650 0.72 0.48272
Target:  5'- cGGUGCGAgcucgacgcugucgACAuacAGCAGCGCGCgaucgGCGGCc -3'
miRNA:   3'- -CUACGCU--------------UGU---UUGUUGCGUGg----CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 39999 0.72 0.485935
Target:  5'- cGAUGCGcgucguCGACGCGCC-CGGCu -3'
miRNA:   3'- -CUACGCuuguuuGUUGCGUGGcGCCG- -5'
28151 5' -51.3 NC_005887.1 + 401 0.72 0.48701
Target:  5'- cAUGCGAcggcucGCGcACuuccucgguguacgcGCGCACCGCGGCc -3'
miRNA:   3'- cUACGCU------UGUuUGu--------------UGCGUGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.