miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 5' -51.3 NC_005887.1 + 2915 0.78 0.250811
Target:  5'- --cGCGAACGAcgccgccgccaagcuGCGcaaGCGCCGCGGCa -3'
miRNA:   3'- cuaCGCUUGUU---------------UGUug-CGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 2985 0.67 0.798544
Target:  5'- -uUGCGcAGCuuggcGGCGGCGUcguUCGCGGCg -3'
miRNA:   3'- cuACGC-UUGu----UUGUUGCGu--GGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 3016 0.72 0.51862
Target:  5'- --gGCGAGgAuggucGCGGCgGUGCCGCGGCg -3'
miRNA:   3'- cuaCGCUUgUu----UGUUG-CGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 3092 0.68 0.75663
Target:  5'- --gGcCGAGCAuGGCuuUGC-CCGCGGCg -3'
miRNA:   3'- cuaC-GCUUGU-UUGuuGCGuGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 3194 0.68 0.767351
Target:  5'- --cGCGccCGGACAGCGagaaggGCCGCGaGCg -3'
miRNA:   3'- cuaCGCuuGUUUGUUGCg-----UGGCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 3324 0.68 0.75663
Target:  5'- cGcgGCG-ACGAaguugcGCAGCGCGa-GCGGCg -3'
miRNA:   3'- -CuaCGCuUGUU------UGUUGCGUggCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 3402 0.66 0.855453
Target:  5'- --cGCGAucuCGuuCAGCGCAUCGuuGCc -3'
miRNA:   3'- cuaCGCUu--GUuuGUUGCGUGGCgcCG- -5'
28151 5' -51.3 NC_005887.1 + 3694 0.69 0.689827
Target:  5'- --gGCG-ACAggUuuucacggccgaAGCGCugCGCGGCc -3'
miRNA:   3'- cuaCGCuUGUuuG------------UUGCGugGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 3914 0.76 0.291245
Target:  5'- gGAUgGCGAAC-GACAugGCGaagaccaacauCCGCGGCg -3'
miRNA:   3'- -CUA-CGCUUGuUUGUugCGU-----------GGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 4025 0.78 0.231118
Target:  5'- --cGCGAGCAAcgGCGggucgacgagcuucuGCGCGCCGCGGa -3'
miRNA:   3'- cuaCGCUUGUU--UGU---------------UGCGUGGCGCCg -5'
28151 5' -51.3 NC_005887.1 + 4286 0.71 0.574848
Target:  5'- --cGCGAGCAGcACGccuuucuccugcGCGCGCUGCaGCa -3'
miRNA:   3'- cuaCGCUUGUU-UGU------------UGCGUGGCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 4390 0.67 0.798544
Target:  5'- --cGuUGAACAAgGCAAUGCGCgccggcgaaggCGCGGCg -3'
miRNA:   3'- cuaC-GCUUGUU-UGUUGCGUG-----------GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 4486 0.68 0.75663
Target:  5'- aGGUGcCGAAC-GGCGcGCGCAUCGCGcGUc -3'
miRNA:   3'- -CUAC-GCUUGuUUGU-UGCGUGGCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 4564 0.81 0.149636
Target:  5'- --gGCGAGCAGACGcgcgaugcGCGCGCCGUucGGCa -3'
miRNA:   3'- cuaCGCUUGUUUGU--------UGCGUGGCG--CCG- -5'
28151 5' -51.3 NC_005887.1 + 4606 0.73 0.443955
Target:  5'- aGAUGC-AACAGAU-GCuCGCCGCGGCg -3'
miRNA:   3'- -CUACGcUUGUUUGuUGcGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 4690 0.69 0.689827
Target:  5'- --cGCGccGGCGGcCAcCgGCGCCGCGGCg -3'
miRNA:   3'- cuaCGC--UUGUUuGUuG-CGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 4972 0.7 0.597763
Target:  5'- --gGCGcACGAACAccuCGCGCCGgcccuCGGCg -3'
miRNA:   3'- cuaCGCuUGUUUGUu--GCGUGGC-----GCCG- -5'
28151 5' -51.3 NC_005887.1 + 5227 0.68 0.75663
Target:  5'- cGUGCcaucAGCAucAGCGGCGCGCCGacgucgGGCa -3'
miRNA:   3'- cUACGc---UUGU--UUGUUGCGUGGCg-----CCG- -5'
28151 5' -51.3 NC_005887.1 + 5405 0.66 0.846552
Target:  5'- --gGUGAACcGGCgGGCgGCGCCGCaGCg -3'
miRNA:   3'- cuaCGCUUGuUUG-UUG-CGUGGCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 5514 0.71 0.573707
Target:  5'- gGAUGCGGcaggagugccaGCGGGCGcguggucGCGCcggucGCUGCGGCg -3'
miRNA:   3'- -CUACGCU-----------UGUUUGU-------UGCG-----UGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.