miRNA display CGI


Results 1 - 20 of 234 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 5' -51.3 NC_005887.1 + 42111 0.77 0.268261
Target:  5'- --gGCGAGCAGGuccaugucCGccuuguacgcaucGCGCGCCGCGGCg -3'
miRNA:   3'- cuaCGCUUGUUU--------GU-------------UGCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 42039 0.71 0.540886
Target:  5'- -cUGCuGAUAGGCgAGCGCGCCGCGcacGCa -3'
miRNA:   3'- cuACGcUUGUUUG-UUGCGUGGCGC---CG- -5'
28151 5' -51.3 NC_005887.1 + 41533 0.69 0.712478
Target:  5'- gGAUGaUGAGCAGAUccuCGCGCgGCGuGCc -3'
miRNA:   3'- -CUAC-GCUUGUUUGuu-GCGUGgCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 41410 0.66 0.846552
Target:  5'- cGAUGcCGAGCAGGucgaauucuucCAGCGCcUCGUGGg -3'
miRNA:   3'- -CUAC-GCUUGUUU-----------GUUGCGuGGCGCCg -5'
28151 5' -51.3 NC_005887.1 + 41372 0.72 0.506529
Target:  5'- uGAUGCGGuguuccuugcccgGCGgcAGCAGCGCGcCCGUGcGCa -3'
miRNA:   3'- -CUACGCU-------------UGU--UUGUUGCGU-GGCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 41285 0.66 0.846552
Target:  5'- -cUGCGcACGGGC-GCGCugcuGCCGCcgGGCa -3'
miRNA:   3'- cuACGCuUGUUUGuUGCG----UGGCG--CCG- -5'
28151 5' -51.3 NC_005887.1 + 41235 0.67 0.777919
Target:  5'- --aGCucGACAAGCAcACGCACCugcuCGGCg -3'
miRNA:   3'- cuaCGc-UUGUUUGU-UGCGUGGc---GCCG- -5'
28151 5' -51.3 NC_005887.1 + 41014 0.72 0.495642
Target:  5'- cGUGUGGACAGGCGucuacugGCGC-CgCGCGGUg -3'
miRNA:   3'- cUACGCUUGUUUGU-------UGCGuG-GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 40989 0.67 0.818404
Target:  5'- -uUGcCGAACu--CggUGCGCgCGCGGUa -3'
miRNA:   3'- cuAC-GCUUGuuuGuuGCGUG-GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 40825 0.69 0.666932
Target:  5'- --gGCGG-CGcGCGGCGCGCCaaCGGCg -3'
miRNA:   3'- cuaCGCUuGUuUGUUGCGUGGc-GCCG- -5'
28151 5' -51.3 NC_005887.1 + 40754 0.68 0.72368
Target:  5'- --gGCGAucGCcGuuGGCGCGCCGCGcGCc -3'
miRNA:   3'- cuaCGCU--UGuUugUUGCGUGGCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 40211 0.72 0.496726
Target:  5'- cGcgGCGAGC--GCGGCGCGCaGCGcGCa -3'
miRNA:   3'- -CuaCGCUUGuuUGUUGCGUGgCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 40168 0.68 0.766286
Target:  5'- cGUGUGAGCugcGCGACGgcacgaagggaauCGCCGcCGGCc -3'
miRNA:   3'- cUACGCUUGuu-UGUUGC-------------GUGGC-GCCG- -5'
28151 5' -51.3 NC_005887.1 + 40136 0.7 0.620807
Target:  5'- cGUGCGGuGCGcGCuGCGCGCCGCGcucGCc -3'
miRNA:   3'- cUACGCU-UGUuUGuUGCGUGGCGC---CG- -5'
28151 5' -51.3 NC_005887.1 + 40004 0.66 0.837403
Target:  5'- cAUGCaGGACGucGCGguGCGCAUcauggCGCGGCu -3'
miRNA:   3'- cUACG-CUUGUu-UGU--UGCGUG-----GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 39999 0.72 0.485935
Target:  5'- cGAUGCGcgucguCGACGCGCC-CGGCu -3'
miRNA:   3'- -CUACGCuuguuuGUUGCGUGGcGCCG- -5'
28151 5' -51.3 NC_005887.1 + 39864 0.76 0.331508
Target:  5'- aGUGCGAAguGACGACGCGCgcaacgaucggCGCGaGCg -3'
miRNA:   3'- cUACGCUUguUUGUUGCGUG-----------GCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 39472 0.69 0.711353
Target:  5'- aGAUGcCGAACGcggucGCGACcacgguuGCGCCGcCGGCc -3'
miRNA:   3'- -CUAC-GCUUGUu----UGUUG-------CGUGGC-GCCG- -5'
28151 5' -51.3 NC_005887.1 + 38120 0.71 0.563464
Target:  5'- --cGCGAGCAGGaaaacaACCGCGGCg -3'
miRNA:   3'- cuaCGCUUGUUUguugcgUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 38006 0.74 0.385026
Target:  5'- gGAUGCGGGCugauucAACAACGCgcgccuGCUGgGGCa -3'
miRNA:   3'- -CUACGCUUGu-----UUGUUGCG------UGGCgCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.