miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 5' -51.3 NC_005887.1 + 5648 0.67 0.818404
Target:  5'- --cGCGAGCucgAAGCGAaGCAU-GCGGCa -3'
miRNA:   3'- cuaCGCUUG---UUUGUUgCGUGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 6360 0.75 0.366565
Target:  5'- cGGUGUGGGCAGACcggugcgaaccGACGUGCgGUGGCc -3'
miRNA:   3'- -CUACGCUUGUUUG-----------UUGCGUGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 6426 0.67 0.798544
Target:  5'- --gGCcGAUcuGAACGGCaaCACCGCGGCa -3'
miRNA:   3'- cuaCGcUUG--UUUGUUGc-GUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 7288 0.69 0.666932
Target:  5'- cGAUGCGcccGACGccGACAGCGC-CUGCGcacGCg -3'
miRNA:   3'- -CUACGC---UUGU--UUGUUGCGuGGCGC---CG- -5'
28151 5' -51.3 NC_005887.1 + 7477 0.69 0.671526
Target:  5'- --cGCGAACGAGCGcuaccuGCGCuugaacuacacccuCgGCGGCa -3'
miRNA:   3'- cuaCGCUUGUUUGU------UGCGu-------------GgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 7521 0.69 0.678404
Target:  5'- --cGCGAACGGcaugccgaucACGACGCGCaCGCcagcccaaacgaGGCg -3'
miRNA:   3'- cuaCGCUUGUU----------UGUUGCGUG-GCG------------CCG- -5'
28151 5' -51.3 NC_005887.1 + 8189 0.69 0.666932
Target:  5'- --aGCuGAACccGAACAGCgGCGCCuCGGCg -3'
miRNA:   3'- cuaCG-CUUG--UUUGUUG-CGUGGcGCCG- -5'
28151 5' -51.3 NC_005887.1 + 8308 0.68 0.75555
Target:  5'- cGAUcCGAacGCGAugGACGCGCUGUuucgcgaGGCa -3'
miRNA:   3'- -CUAcGCU--UGUUugUUGCGUGGCG-------CCG- -5'
28151 5' -51.3 NC_005887.1 + 8458 0.7 0.620807
Target:  5'- --cGCGAuCGAGCGcccgGCGCaACCGCucGGCg -3'
miRNA:   3'- cuaCGCUuGUUUGU----UGCG-UGGCG--CCG- -5'
28151 5' -51.3 NC_005887.1 + 8690 0.75 0.366565
Target:  5'- cGGUGCaGGGCccGGCGAUcCGCCGCGGCg -3'
miRNA:   3'- -CUACG-CUUGu-UUGUUGcGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 8777 0.7 0.63235
Target:  5'- --cGCG-ACGAA--GCGCuuaccGCCGCGGCg -3'
miRNA:   3'- cuaCGCuUGUUUguUGCG-----UGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 9821 0.67 0.818404
Target:  5'- --cGCGAACGcgucGCAGCcgguCAgCGCGGCc -3'
miRNA:   3'- cuaCGCUUGUu---UGUUGc---GUgGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 10093 0.69 0.666932
Target:  5'- cGUGUGGGCGGcc--CGCGCCGaCGGCc -3'
miRNA:   3'- cUACGCUUGUUuguuGCGUGGC-GCCG- -5'
28151 5' -51.3 NC_005887.1 + 10313 0.71 0.556662
Target:  5'- gGcgGCGGACGAuCAcccacaggucaucagACGCGCCGUccGGCg -3'
miRNA:   3'- -CuaCGCUUGUUuGU---------------UGCGUGGCG--CCG- -5'
28151 5' -51.3 NC_005887.1 + 10390 0.66 0.864097
Target:  5'- --gGCGGACGAuuGCGGCucgucauccuGCAgCGCGGg -3'
miRNA:   3'- cuaCGCUUGUU--UGUUG----------CGUgGCGCCg -5'
28151 5' -51.3 NC_005887.1 + 10508 0.67 0.788321
Target:  5'- --cGCGAugGGuGCAcUGCGCCGuCGGUc -3'
miRNA:   3'- cuaCGCUugUU-UGUuGCGUGGC-GCCG- -5'
28151 5' -51.3 NC_005887.1 + 10551 0.66 0.837403
Target:  5'- cGAUGCGGACcagucGAGCGugauCGCGCC--GGCc -3'
miRNA:   3'- -CUACGCUUG-----UUUGUu---GCGUGGcgCCG- -5'
28151 5' -51.3 NC_005887.1 + 10786 0.66 0.837403
Target:  5'- --cGCcauCGAACAGCgGCACCGC-GCg -3'
miRNA:   3'- cuaCGcuuGUUUGUUG-CGUGGCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 11058 0.66 0.837403
Target:  5'- --cGUGGACAcuGAUuucCGCGCCGCuGCu -3'
miRNA:   3'- cuaCGCUUGU--UUGuu-GCGUGGCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 11112 0.78 0.228593
Target:  5'- uGGUGCGcGCGAAgcuggcCGAgGCGCCGUGGCg -3'
miRNA:   3'- -CUACGCuUGUUU------GUUgCGUGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.