miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 3' -64.5 NC_005887.1 + 30184 0.68 0.161473
Target:  5'- aCGCCUGCAgcuuccacuucUCGCCGGCCaGCcacgccGCGu -3'
miRNA:   3'- -GCGGGCGU-----------AGCGGCCGGcCGuca---CGC- -5'
28152 3' -64.5 NC_005887.1 + 21495 0.69 0.134201
Target:  5'- -uCUCGCAUCGCC-GCCGGCAaucgGCGc -3'
miRNA:   3'- gcGGGCGUAGCGGcCGGCCGUca--CGC- -5'
28152 3' -64.5 NC_005887.1 + 13381 0.69 0.13782
Target:  5'- gCGCUCGCGcugaagGCCGGCgCGGCGGacgucgGCGg -3'
miRNA:   3'- -GCGGGCGUag----CGGCCG-GCCGUCa-----CGC- -5'
28152 3' -64.5 NC_005887.1 + 878 0.69 0.13782
Target:  5'- gGCCCGCGcCGCCGGaCGaGuCAG-GCGg -3'
miRNA:   3'- gCGGGCGUaGCGGCCgGC-C-GUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 1488 0.69 0.13782
Target:  5'- gGCgUGCGgcgcUCGCgCGGCgCGGCcGUGCGg -3'
miRNA:   3'- gCGgGCGU----AGCG-GCCG-GCCGuCACGC- -5'
28152 3' -64.5 NC_005887.1 + 16517 0.69 0.13782
Target:  5'- gGCCgauCGCGUCGCC-GCCGGCgccgAGUGgGc -3'
miRNA:   3'- gCGG---GCGUAGCGGcCGGCCG----UCACgC- -5'
28152 3' -64.5 NC_005887.1 + 27264 0.69 0.14078
Target:  5'- gGCCCGCGUCGCCaaugaucGgcacgacuuccauGCCGGacaGGUGCu -3'
miRNA:   3'- gCGGGCGUAGCGG-------C-------------CGGCCg--UCACGc -5'
28152 3' -64.5 NC_005887.1 + 13328 0.69 0.153208
Target:  5'- cCGgCCGCAUCGCgGaucucGCCGcGCAGUGg- -3'
miRNA:   3'- -GCgGGCGUAGCGgC-----CGGC-CGUCACgc -5'
28152 3' -64.5 NC_005887.1 + 29044 0.68 0.161473
Target:  5'- uCGgCCGUuUCGCCGGCCGGUAc---- -3'
miRNA:   3'- -GCgGGCGuAGCGGCCGGCCGUcacgc -5'
28152 3' -64.5 NC_005887.1 + 25017 0.7 0.13067
Target:  5'- gCGCCgGCGgcCGCCGGCCagccGGUAGcGCa -3'
miRNA:   3'- -GCGGgCGUa-GCGGCCGG----CCGUCaCGc -5'
28152 3' -64.5 NC_005887.1 + 26331 0.7 0.123863
Target:  5'- aGgCCGUGgccggCGCUGGCCGGguGcGCGa -3'
miRNA:   3'- gCgGGCGUa----GCGGCCGGCCguCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 9817 0.7 0.120584
Target:  5'- gGCCCGCGaacgCGUCGcaGCCGGuCAGcGCGg -3'
miRNA:   3'- gCGGGCGUa---GCGGC--CGGCC-GUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 40770 0.76 0.040021
Target:  5'- gCGCCgCGCGcCGCCGaGCCGGCGGU-CGa -3'
miRNA:   3'- -GCGG-GCGUaGCGGC-CGGCCGUCAcGC- -5'
28152 3' -64.5 NC_005887.1 + 35621 0.74 0.062558
Target:  5'- uCGCCCGgguugaaGUCGCUcgGGCUGaGCGGUGCGa -3'
miRNA:   3'- -GCGGGCg------UAGCGG--CCGGC-CGUCACGC- -5'
28152 3' -64.5 NC_005887.1 + 11300 0.73 0.07184
Target:  5'- uGCUCGCAgcgGCCGGCuCGGCAGcgaGCGc -3'
miRNA:   3'- gCGGGCGUag-CGGCCG-GCCGUCa--CGC- -5'
28152 3' -64.5 NC_005887.1 + 12340 0.73 0.07803
Target:  5'- gCGUacgUCGC-UCGCCGGCCaGGCGGUGaCGu -3'
miRNA:   3'- -GCG---GGCGuAGCGGCCGG-CCGUCAC-GC- -5'
28152 3' -64.5 NC_005887.1 + 4883 0.72 0.086844
Target:  5'- cCGCUCGCgacgaugGUCGCCgagGGCCGGCGcgagguguucGUGCGc -3'
miRNA:   3'- -GCGGGCG-------UAGCGG---CCGGCCGU----------CACGC- -5'
28152 3' -64.5 NC_005887.1 + 32747 0.71 0.104517
Target:  5'- gCGCUCGCGUgcgCGCCGgcgcgcgccaugcaGCCGGCucGUGCGc -3'
miRNA:   3'- -GCGGGCGUA---GCGGC--------------CGGCCGu-CACGC- -5'
28152 3' -64.5 NC_005887.1 + 27994 0.71 0.111227
Target:  5'- gGCCgaauCGCGUCGUCGGCCGGCGu---- -3'
miRNA:   3'- gCGG----GCGUAGCGGCCGGCCGUcacgc -5'
28152 3' -64.5 NC_005887.1 + 35681 0.7 0.114268
Target:  5'- aGCgCGCgAUCGgCGGCCGGCuucGCGg -3'
miRNA:   3'- gCGgGCG-UAGCgGCCGGCCGucaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.