miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 3' -64.5 NC_005887.1 + 23562 1.08 0.000112
Target:  5'- cCGCCCGCAUCGCCGGCCGGCAGUGCGa -3'
miRNA:   3'- -GCGGGCGUAGCGGCCGGCCGUCACGC- -5'
28152 3' -64.5 NC_005887.1 + 23634 0.8 0.020909
Target:  5'- gCGUUCGCAcUGCCGGCCGGCGaUGCGg -3'
miRNA:   3'- -GCGGGCGUaGCGGCCGGCCGUcACGC- -5'
28152 3' -64.5 NC_005887.1 + 2059 0.77 0.037834
Target:  5'- gCGCUCGUAguaGCCGGCCGGCAGguUGuCGa -3'
miRNA:   3'- -GCGGGCGUag-CGGCCGGCCGUC--AC-GC- -5'
28152 3' -64.5 NC_005887.1 + 40770 0.76 0.040021
Target:  5'- gCGCCgCGCGcCGCCGaGCCGGCGGU-CGa -3'
miRNA:   3'- -GCGG-GCGUaGCGGC-CGGCCGUCAcGC- -5'
28152 3' -64.5 NC_005887.1 + 3077 0.76 0.042331
Target:  5'- uGCCCGCggCGCUGGCC-GCAG-GCGc -3'
miRNA:   3'- gCGGGCGuaGCGGCCGGcCGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 16305 0.75 0.050632
Target:  5'- uGCCCGUGcgcUCGCCGGCCGGCGuaucgaucgugaccUGCGu -3'
miRNA:   3'- gCGGGCGU---AGCGGCCGGCCGUc-------------ACGC- -5'
28152 3' -64.5 NC_005887.1 + 13454 0.74 0.055977
Target:  5'- aCGUCCGCcgCGCCGGCCuuCAGcGCGa -3'
miRNA:   3'- -GCGGGCGuaGCGGCCGGccGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 35621 0.74 0.062558
Target:  5'- uCGCCCGgguugaaGUCGCUcgGGCUGaGCGGUGCGa -3'
miRNA:   3'- -GCGGGCg------UAGCGG--CCGGC-CGUCACGC- -5'
28152 3' -64.5 NC_005887.1 + 11300 0.73 0.07184
Target:  5'- uGCUCGCAgcgGCCGGCuCGGCAGcgaGCGc -3'
miRNA:   3'- gCGGGCGUag-CGGCCG-GCCGUCa--CGC- -5'
28152 3' -64.5 NC_005887.1 + 12340 0.73 0.07803
Target:  5'- gCGUacgUCGC-UCGCCGGCCaGGCGGUGaCGu -3'
miRNA:   3'- -GCG---GGCGuAGCGGCCGG-CCGUCAC-GC- -5'
28152 3' -64.5 NC_005887.1 + 4883 0.72 0.086844
Target:  5'- cCGCUCGCgacgaugGUCGCCgagGGCCGGCGcgagguguucGUGCGc -3'
miRNA:   3'- -GCGGGCG-------UAGCGG---CCGGCCGU----------CACGC- -5'
28152 3' -64.5 NC_005887.1 + 21575 0.71 0.099805
Target:  5'- aGCCgGCGUCGuuGcgccgauuGCCGGCGGcgaUGCGa -3'
miRNA:   3'- gCGGgCGUAGCggC--------CGGCCGUC---ACGC- -5'
28152 3' -64.5 NC_005887.1 + 32747 0.71 0.104517
Target:  5'- gCGCUCGCGUgcgCGCCGgcgcgcgccaugcaGCCGGCucGUGCGc -3'
miRNA:   3'- -GCGGGCGUA---GCGGC--------------CGGCCGu-CACGC- -5'
28152 3' -64.5 NC_005887.1 + 1062 0.71 0.10537
Target:  5'- gCGCgCGCA-CGgCGGCCGGCAauuUGCGc -3'
miRNA:   3'- -GCGgGCGUaGCgGCCGGCCGUc--ACGC- -5'
28152 3' -64.5 NC_005887.1 + 20832 0.71 0.111227
Target:  5'- gCGCCaCGUGUCGCaacguuGCCGGCGcGUGCa -3'
miRNA:   3'- -GCGG-GCGUAGCGgc----CGGCCGU-CACGc -5'
28152 3' -64.5 NC_005887.1 + 27994 0.71 0.111227
Target:  5'- gGCCgaauCGCGUCGUCGGCCGGCGu---- -3'
miRNA:   3'- gCGG----GCGUAGCGGCCGGCCGUcacgc -5'
28152 3' -64.5 NC_005887.1 + 35681 0.7 0.114268
Target:  5'- aGCgCGCgAUCGgCGGCCGGCuucGCGg -3'
miRNA:   3'- gCGgGCG-UAGCgGCCGGCCGucaCGC- -5'
28152 3' -64.5 NC_005887.1 + 34358 0.7 0.114268
Target:  5'- cCGCCCGCAgucagcCGCaCGGCgaCGGCA-UGCGc -3'
miRNA:   3'- -GCGGGCGUa-----GCG-GCCG--GCCGUcACGC- -5'
28152 3' -64.5 NC_005887.1 + 36488 0.7 0.120584
Target:  5'- aGCCgGCcgCG-CGGaaGGCGGUGCGc -3'
miRNA:   3'- gCGGgCGuaGCgGCCggCCGUCACGC- -5'
28152 3' -64.5 NC_005887.1 + 9817 0.7 0.120584
Target:  5'- gGCCCGCGaacgCGUCGcaGCCGGuCAGcGCGg -3'
miRNA:   3'- gCGGGCGUa---GCGGC--CGGCC-GUCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.