miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 3' -64.5 NC_005887.1 + 26331 0.7 0.123863
Target:  5'- aGgCCGUGgccggCGCUGGCCGGguGcGCGa -3'
miRNA:   3'- gCgGGCGUa----GCGGCCGGCCguCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 18195 0.7 0.123863
Target:  5'- gGCCCGCGcuUCGCCGGuuGcGUAcaGCGc -3'
miRNA:   3'- gCGGGCGU--AGCGGCCggC-CGUcaCGC- -5'
28152 3' -64.5 NC_005887.1 + 13640 0.7 0.127224
Target:  5'- gGCCuccuuCGCGUCGUCGGCCugcucgggcGGCAGcGCa -3'
miRNA:   3'- gCGG-----GCGUAGCGGCCGG---------CCGUCaCGc -5'
28152 3' -64.5 NC_005887.1 + 11372 0.7 0.127224
Target:  5'- gCGCUCGC--UGCCGaGCCGGCcGcUGCGa -3'
miRNA:   3'- -GCGGGCGuaGCGGC-CGGCCGuC-ACGC- -5'
28152 3' -64.5 NC_005887.1 + 32371 0.7 0.128592
Target:  5'- aCGCaCUGCGgcgCGCCGGCUGGCccgacgaucgccccGUGUGg -3'
miRNA:   3'- -GCG-GGCGUa--GCGGCCGGCCGu-------------CACGC- -5'
28152 3' -64.5 NC_005887.1 + 25017 0.7 0.13067
Target:  5'- gCGCCgGCGgcCGCCGGCCagccGGUAGcGCa -3'
miRNA:   3'- -GCGGgCGUa-GCGGCCGG----CCGUCaCGc -5'
28152 3' -64.5 NC_005887.1 + 21495 0.69 0.134201
Target:  5'- -uCUCGCAUCGCC-GCCGGCAaucgGCGc -3'
miRNA:   3'- gcGGGCGUAGCGGcCGGCCGUca--CGC- -5'
28152 3' -64.5 NC_005887.1 + 16221 0.69 0.134201
Target:  5'- uCGCUCGCGcacUCGgCGcGCCGGUGGUugGCGg -3'
miRNA:   3'- -GCGGGCGU---AGCgGC-CGGCCGUCA--CGC- -5'
28152 3' -64.5 NC_005887.1 + 1488 0.69 0.13782
Target:  5'- gGCgUGCGgcgcUCGCgCGGCgCGGCcGUGCGg -3'
miRNA:   3'- gCGgGCGU----AGCG-GCCG-GCCGuCACGC- -5'
28152 3' -64.5 NC_005887.1 + 9354 0.69 0.13782
Target:  5'- uGCCCGUaaccugcggcGUCGCCGuGCCGaccGCcGUGCa -3'
miRNA:   3'- gCGGGCG----------UAGCGGC-CGGC---CGuCACGc -5'
28152 3' -64.5 NC_005887.1 + 13381 0.69 0.13782
Target:  5'- gCGCUCGCGcugaagGCCGGCgCGGCGGacgucgGCGg -3'
miRNA:   3'- -GCGGGCGUag----CGGCCG-GCCGUCa-----CGC- -5'
28152 3' -64.5 NC_005887.1 + 16517 0.69 0.13782
Target:  5'- gGCCgauCGCGUCGCC-GCCGGCgccgAGUGgGc -3'
miRNA:   3'- gCGG---GCGUAGCGGcCGGCCG----UCACgC- -5'
28152 3' -64.5 NC_005887.1 + 878 0.69 0.13782
Target:  5'- gGCCCGCGcCGCCGGaCGaGuCAG-GCGg -3'
miRNA:   3'- gCGGGCGUaGCGGCCgGC-C-GUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 27264 0.69 0.14078
Target:  5'- gGCCCGCGUCGCCaaugaucGgcacgacuuccauGCCGGacaGGUGCu -3'
miRNA:   3'- gCGGGCGUAGCGG-------C-------------CGGCCg--UCACGc -5'
28152 3' -64.5 NC_005887.1 + 39611 0.69 0.14078
Target:  5'- aGCCCGUcgCGCgGauugggguacagaGCCGGCgccaguuGGUGCGg -3'
miRNA:   3'- gCGGGCGuaGCGgC-------------CGGCCG-------UCACGC- -5'
28152 3' -64.5 NC_005887.1 + 14088 0.69 0.141529
Target:  5'- gCGCCgGCggCGC--GCCGGCGGUuGCGg -3'
miRNA:   3'- -GCGGgCGuaGCGgcCGGCCGUCA-CGC- -5'
28152 3' -64.5 NC_005887.1 + 39886 0.69 0.145328
Target:  5'- gGCCCGUcgCGCUuuauCCaGCAGUGCGa -3'
miRNA:   3'- gCGGGCGuaGCGGcc--GGcCGUCACGC- -5'
28152 3' -64.5 NC_005887.1 + 13328 0.69 0.153208
Target:  5'- cCGgCCGCAUCGCgGaucucGCCGcGCAGUGg- -3'
miRNA:   3'- -GCgGGCGUAGCGgC-----CGGC-CGUCACgc -5'
28152 3' -64.5 NC_005887.1 + 30184 0.68 0.161473
Target:  5'- aCGCCUGCAgcuuccacuucUCGCCGGCCaGCcacgccGCGu -3'
miRNA:   3'- -GCGGGCGU-----------AGCGGCCGGcCGuca---CGC- -5'
28152 3' -64.5 NC_005887.1 + 29044 0.68 0.161473
Target:  5'- uCGgCCGUuUCGCCGGCCGGUAc---- -3'
miRNA:   3'- -GCgGGCGuAGCGGCCGGCCGUcacgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.