miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 3' -64.5 NC_005887.1 + 10909 0.66 0.225547
Target:  5'- aGCCggCGCAgaugaCGUCGGCCGGCc-UGCu -3'
miRNA:   3'- gCGG--GCGUa----GCGGCCGGCCGucACGc -5'
28152 3' -64.5 NC_005887.1 + 5529 0.66 0.225547
Target:  5'- gGCCUGCGUCGUggUGGaugCGGCAGgagugccaGCGg -3'
miRNA:   3'- gCGGGCGUAGCG--GCCg--GCCGUCa-------CGC- -5'
28152 3' -64.5 NC_005887.1 + 4850 0.66 0.225547
Target:  5'- aGCaCgGCcUCGCCGGCUGGCGucaGCu -3'
miRNA:   3'- gCG-GgCGuAGCGGCCGGCCGUca-CGc -5'
28152 3' -64.5 NC_005887.1 + 13273 0.66 0.219935
Target:  5'- gCGUCaGCAgcgacacaCGUCGGCCGGCGGccUGCu -3'
miRNA:   3'- -GCGGgCGUa-------GCGGCCGGCCGUC--ACGc -5'
28152 3' -64.5 NC_005887.1 + 12421 0.66 0.219935
Target:  5'- gGCCUGCcacgucacCGCCuGGCCGGCGa-GCGa -3'
miRNA:   3'- gCGGGCGua------GCGG-CCGGCCGUcaCGC- -5'
28152 3' -64.5 NC_005887.1 + 37170 0.66 0.219935
Target:  5'- gGCCgCGCgAUCGCCgaGGCUGuGCucgcccgcuucGGUGCGa -3'
miRNA:   3'- gCGG-GCG-UAGCGG--CCGGC-CG-----------UCACGC- -5'
28152 3' -64.5 NC_005887.1 + 35893 0.66 0.21938
Target:  5'- gCGCCCGUacuucagGUCGCgcacuucgaucuCGGCCGGCcGUcCGg -3'
miRNA:   3'- -GCGGGCG-------UAGCG------------GCCGGCCGuCAcGC- -5'
28152 3' -64.5 NC_005887.1 + 29417 0.67 0.214443
Target:  5'- gGCUCGaCAgcUCGUCGGCCGaGUAGUcgucgGCGu -3'
miRNA:   3'- gCGGGC-GU--AGCGGCCGGC-CGUCA-----CGC- -5'
28152 3' -64.5 NC_005887.1 + 2180 0.67 0.214443
Target:  5'- gGCCUGa--CGCCGGCCG-CGGUGa- -3'
miRNA:   3'- gCGGGCguaGCGGCCGGCcGUCACgc -5'
28152 3' -64.5 NC_005887.1 + 3390 0.67 0.209068
Target:  5'- gCGCaCGCuguUCGCCGcgcgcuaccGCUGGCAGgGCGg -3'
miRNA:   3'- -GCGgGCGu--AGCGGC---------CGGCCGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 23389 0.67 0.209068
Target:  5'- uGCUCGCGcUGCC-GCUGGCAGccUGCa -3'
miRNA:   3'- gCGGGCGUaGCGGcCGGCCGUC--ACGc -5'
28152 3' -64.5 NC_005887.1 + 14975 0.67 0.203811
Target:  5'- aCGCCuaCGCcgCGCaGGCCGcGCAGgccgcagGCGu -3'
miRNA:   3'- -GCGG--GCGuaGCGgCCGGC-CGUCa------CGC- -5'
28152 3' -64.5 NC_005887.1 + 13524 0.67 0.203292
Target:  5'- gCGCCUGCG-CGCCcgucaggaugaacGuGCUGaGCGGUGCGc -3'
miRNA:   3'- -GCGGGCGUaGCGG-------------C-CGGC-CGUCACGC- -5'
28152 3' -64.5 NC_005887.1 + 25668 0.67 0.198668
Target:  5'- cCGCagCGCGUCGCCaucGUCGGuCAGUGgGu -3'
miRNA:   3'- -GCGg-GCGUAGCGGc--CGGCC-GUCACgC- -5'
28152 3' -64.5 NC_005887.1 + 23111 0.67 0.198668
Target:  5'- gGCCaCGUAcgUGuuGGCUGGCGGUGa- -3'
miRNA:   3'- gCGG-GCGUa-GCggCCGGCCGUCACgc -5'
28152 3' -64.5 NC_005887.1 + 18109 0.67 0.193639
Target:  5'- uCGCCCa-AUCGUCGGCCGuCAGUccgGCGc -3'
miRNA:   3'- -GCGGGcgUAGCGGCCGGCcGUCA---CGC- -5'
28152 3' -64.5 NC_005887.1 + 12708 0.67 0.193639
Target:  5'- aCGCgCGCA-CGCUGGUCGcGCAGcagcagaaUGCGc -3'
miRNA:   3'- -GCGgGCGUaGCGGCCGGC-CGUC--------ACGC- -5'
28152 3' -64.5 NC_005887.1 + 23442 0.67 0.193639
Target:  5'- cCGCCCGCcauccCGCCGcuuccaccggaaGcCCGGCAGccgGCGa -3'
miRNA:   3'- -GCGGGCGua---GCGGC------------C-GGCCGUCa--CGC- -5'
28152 3' -64.5 NC_005887.1 + 8543 0.67 0.193639
Target:  5'- aGCCaCGUGUCGUC-GCCGaGCGGuUGCGc -3'
miRNA:   3'- gCGG-GCGUAGCGGcCGGC-CGUC-ACGC- -5'
28152 3' -64.5 NC_005887.1 + 983 0.67 0.188722
Target:  5'- uCGCCgacacgCGCaAUUGCCGGCCG-CcGUGCGc -3'
miRNA:   3'- -GCGG------GCG-UAGCGGCCGGCcGuCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.